| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6991 |
|---|
| Symbol | |
|---|
| ID | 6279954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3368993 |
|---|
| End bp | 3372187 |
|---|
| Gene Length | 3195 bp |
|---|
| Protein Length | 1064 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642618014 |
|---|
| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
|---|
| Protein accession | YP_001890650 |
|---|
| Protein GI | 187921618 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.699098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAT TTTTTATCAA CCGACCGATT CTCGCGTGGG TCATCGCCAT CGTCATCATG
ATGATTGGCG GCGCTTCCAT CGAGACGCTT CCGGTCGAAC AGTATCCGAG CGTGGCGCCG
GTCTCCGTGC AGATCACCGC GACATATCCC GGCGCGTCGG CGGAAACGAT CGCGACTACC
GTCACGCAGG TGATCGAGCA GAAACTGAGC GGCATCGACC ACCTGCTCTA CATGTCGTCC
ACCAGCAGCT CGTCCGGGCA AGCGCGTATC ACGCTGACAT TTCAGCAGGG CACCAACGCG
GACATCGCTC AGGTGCAGGT GCAGAACAAG GTCGAGCAGG CCAGTTCGTC GCTGCCGGAG
ACGGTTCAGG AGCAAGGCGT GCAGGTCGCG AAAGCGGCCA ACGCGTTCCT GATGATCGTG
TCGTTGTCGT CGACGGACGG CAGCATGAAT TCCATCGATC TCGGCAATAT CATCGCGACG
CAAATCGAGG ACCCGCTCAC GCAGATCGAC GGCGTGGGCG ACGTTACGCT GTTCGGCGCA
CAACACGCCA TGCGCATCTG GCTCGATCCG GTGAAGTTGC AGGCAGTTGG ATTGACCACC
GCCGACGTGA CCAGCGCGAT CACGAATCAG AACGTGCAAC TCTCAGTGGG CCAGATTGGC
GGCTCGCCGT CCACGAAAAC GCAAGCCATC AACGCGACGA TTTCCGCATC GAGCCTGCTC
ACCACGCCCG CGCAGTTCGG CGCGATTCTG TTGCGTGTGA ATAGCGACGG CTCGAAGGTC
ATGCTCAAGG ACGTCGCGCG CGTCGAGGTG GGCGGCGACG ACTACAGCAC GGACTCGCGC
CTGAACGGCA AGCCGGCCGC ATCGCTCGCG GTCAAGCTCG CGAGCGGTGC GAATGCCATG
AGCGTGGCGA AGGCCGTGCG CGCGAAGCTC GACGAAATGA GCGGGCAGTT GCCGCGCACC
GTGGTGGTCG ATTATCCGTA CGACACCACG CCCTTCGTGA AGATCTCGAT CGAAGAAGTG
GTGAAGACAC TGGTCGAAGC GGTAATGCTG GTGTTCGTCG TGATGTACGT GTTCTTGCAA
AACCTGCGCG CGACGCTGAT TCCGACCATT GTCGTGCCGG TCGCGTTGCT CGGCACGTTC
GCGGTAATGT CCGCGGTCGG CTTTTCGATC AACGTGCTGT CGATGTTCGG GCTCGTGCTG
GCGATCGGCC TCCTGGTGGA CGACGCCATC GTGGTCGTCG AAAACGTCGA GCGGTTGATC
GCCGAAGAAG GACTGTCGCC CGTCGAAGCC ACGCGCAAGG CGATGAAGCA GATCACCGGC
GCGCTGGTCG GCATCACGAC GGTGCTGATC GCCGTGTTCA TTCCGATGGC GTTCTTCTCA
GGCTCGACCG GCGCGATCTA CCGGCAGTTC TCGGTGACGA TCGTCGCGGC GATGCTTCTC
TCCGTGTTCC TCGCGCTGAC ACTCACGCCA GCGCTGTGCG CGACCTTGCT GCGACGCGCG
GACGTCGAGC ATCAAGCGAA GCGTGGCGTG CTCGGCTGGT TCAACCGCGT GCTTGCGCGC
GGCACTGATC GCTACGACTC GGCGGTCTCG CGTGTGATCG GCAAGCCGAT GCGCTACATG
GTGATTTACG TGTTGATCGC GGGCGTGGTG GCGTTGCTCT TCGTGAAGCT GCCGTCGTCG
TACCTGCCGG ACGAGGATCA GGGGATCATC ATCACGTCGA TTTCCACGCC CGTCGGCACG
CCGGCCGCGC AGACGCTGGA GACCGTGAAA AAAGTCGAAG CTTATTATCT CGGGCTTCCG
CAGGTCGACA AGATCATCGC GCTGACGGGT TTCAGTTTCA ACGGCTCCGG ACAGAACAAC
GCGTTGACCT TCGTCAAGCT CAAGGACTGG AGCACCCGGC GCGGCAAAGA CGGCTCGGCG
GCGGCGCTGA TCCAGCACGC CAACATGCAC TTCGCGGCCA CGCGCGACGC ACAGATTTTC
GCGCTGAATC CGCCGGCCAT TCAGGAACTC GGCACACAAA GCGGCCTCGA TTTCGAACTG
GAGGATCGCG CGGGCCAAGG CCACGACAAG CTGATGGCCG CGCGTCAGCA ACTGCTCGCG
CTCGCAGCCA AAGACAGCGC GCTGTCCGGC ATGCGCCCCG GCGGTCTCGA CGACACGCCG
CAGTTCCATG TCGACATCGA CCGTGAGAAG GCCAGCGCGC TCGGGCTTTC CATTGCCGAT
GTGAACGACA CGTTGCAAAC CGCGTTCGGT TCGTCGTATG TGAACAATTA TGTCGATACG
GGGCGGATTC AAAAGGTCTA TGTGCAAGCC GACGCGCCGT ACCGGATGAT GCCGTCCGAC
ATCGGCCGAT GGTATGTGCG GTCGAGCACC ACTTTGACGA GCACTAGTAC GGCTAGTACA
ACAAGCAGCA CGAGCAGCAG CACGACCACC AGCGGATACG ACGGCGAGAT GGTGCCCTTC
TCCGCCTTCG CCACCGGCAA ATGGACTTTT GGGCCGCCGC AGATCGAGCG CTTCAACCGC
ACGCTGGCGA TGGAGATCAC CGCGCAAACC GGTGCGAATA CCAGCACGGG CCAGGCAATG
GACGCCGTCG ACGCGCTCGT CAAGAAACTG CCCGCGGGCT ACGGCATCGA CTGGACTGGG
CAATCGTACC AGGAGCGCAT CGCCGGCTCT CAGGCGATCT ATCTGTACGC GATCTCGTTG
ATCGTCGTGT TCCTCTGTCT CGCCGGACTG TACGAGAGCT GGTCCATTCC GATCGCGGTG
ATTCTGGTAG TGCCGCTCGG CGTGCTCGGC GCGGTGCTGG GCGCGCATAT CCGCGGGCTC
TCCGACGACA TCTACTTCAA GGTCGGCCTG CTCGCGACCA TTGGTCTGTC TACCAAGAAC
GCGATCCTGA TTGTCGAATT CGCCAAGGAT CTGCAAGCGC AGGGCCGTGG ACTGATCGAG
GCCACCGTCG AAGCCGCCAG GCTGAGGCTG CGGCCGATTC TGATGACTTC GCTCGCGTTC
ATATTCGGCG TCTTGCCGCT CGTGATCAGC AGCGGCGCCG GTTCGGCAAG CCGTCATGCG
ATCGGCACCG GTGTGATGGG CGGCATGATC GCCGCCACGT TGCTCGCGAT TTTCTTCGTG
CCGGTGTTCT TCGTCGTCGT GCGACGCCTG TTCGGCGAAC ACGGCGACCC CAAGCAACAG
GAAGGTGTTG AATGA
|
|---|
| Protein sequence | MAGFFINRPI LAWVIAIVIM MIGGASIETL PVEQYPSVAP VSVQITATYP GASAETIATT
VTQVIEQKLS GIDHLLYMSS TSSSSGQARI TLTFQQGTNA DIAQVQVQNK VEQASSSLPE
TVQEQGVQVA KAANAFLMIV SLSSTDGSMN SIDLGNIIAT QIEDPLTQID GVGDVTLFGA
QHAMRIWLDP VKLQAVGLTT ADVTSAITNQ NVQLSVGQIG GSPSTKTQAI NATISASSLL
TTPAQFGAIL LRVNSDGSKV MLKDVARVEV GGDDYSTDSR LNGKPAASLA VKLASGANAM
SVAKAVRAKL DEMSGQLPRT VVVDYPYDTT PFVKISIEEV VKTLVEAVML VFVVMYVFLQ
NLRATLIPTI VVPVALLGTF AVMSAVGFSI NVLSMFGLVL AIGLLVDDAI VVVENVERLI
AEEGLSPVEA TRKAMKQITG ALVGITTVLI AVFIPMAFFS GSTGAIYRQF SVTIVAAMLL
SVFLALTLTP ALCATLLRRA DVEHQAKRGV LGWFNRVLAR GTDRYDSAVS RVIGKPMRYM
VIYVLIAGVV ALLFVKLPSS YLPDEDQGII ITSISTPVGT PAAQTLETVK KVEAYYLGLP
QVDKIIALTG FSFNGSGQNN ALTFVKLKDW STRRGKDGSA AALIQHANMH FAATRDAQIF
ALNPPAIQEL GTQSGLDFEL EDRAGQGHDK LMAARQQLLA LAAKDSALSG MRPGGLDDTP
QFHVDIDREK ASALGLSIAD VNDTLQTAFG SSYVNNYVDT GRIQKVYVQA DAPYRMMPSD
IGRWYVRSST TLTSTSTAST TSSTSSSTTT SGYDGEMVPF SAFATGKWTF GPPQIERFNR
TLAMEITAQT GANTSTGQAM DAVDALVKKL PAGYGIDWTG QSYQERIAGS QAIYLYAISL
IVVFLCLAGL YESWSIPIAV ILVVPLGVLG AVLGAHIRGL SDDIYFKVGL LATIGLSTKN
AILIVEFAKD LQAQGRGLIE ATVEAARLRL RPILMTSLAF IFGVLPLVIS SGAGSASRHA
IGTGVMGGMI AATLLAIFFV PVFFVVVRRL FGEHGDPKQQ EGVE
|
|---|
| |