| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6939 |
|---|
| Symbol | |
|---|
| ID | 6280377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3310107 |
|---|
| End bp | 3311507 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642617966 |
|---|
| Product | Citrate transporter |
|---|
| Protein accession | YP_001890602 |
|---|
| Protein GI | 187921570 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2610] H+/gluconate symporter and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.135388 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTTG TCATCGTCCT CGCCGCGCTG GCGTTTTTGA TGTTTGCCGC TTATCGCGGC
TACAGCGTCA TTCTATTTGC GCCGATCGCC GCGCTCGGCG CTGTTCTGCT CACCGATCCG
GCGGCCGTCG CGCCGGTTTT CACCGGCATC TTCATGGAGA AGATGGTCGG CTTCGTTAAG
CTCTACTTCC CGGTGTTCCT GCTGGGCGCC GTGTTCGGTA AGGTCATCGA ACTGTCGGGC
TTCTCGGAAT CGATCGTGGC CGCCGCGATT CGCTATATCG GCCGCTCGCG CGCCAATGCG
GTGATCGTTG CCGTGTGCGC GCTGCTCACC TACGGCGGCG TCTCGCTGTT CGTGGTGGTA
TTCGCGGTCT ATCCGTTTGC CGCCGAGCTG TACCGCCAGA GCAATATTCC GAAGCGCCTG
ATGCCCGGCG CGATCGCACT CGGCGCGTTC TCGTTCACGA TGGATTCACT GCCGGGTACG
CCGCAGATCC AGAACATCAT CCCGACCACG TTCTTCAAGA CGACGTCGTG GGCTGCGCCC
GCACTCGGCG TGATCGGCTC GCTGTTCATC ATCGTGGTCG GCCTGACCTA TCTGGAATGG
CGCCGCCGTT CGGCGATGGC GACCGGCGAA GGTTACGGCA CAGAGCTCGT CAACGAGCCG
GATCGTGTGG AATCGAAGCA ACTGCCGCAT CCGTTGCTGG CGGTTGCGCC GCTGGTTCTG
GTGGGCGTCG CGAACTTTCT GCTGACCCGC TGGATTCCGA ACTGGTACGG CGCGTCGTAC
ACGGTTGCGC CGGACATTCT GCCGGGCGTT CACGCACCGG TCACGACGAC GATCAAGGCC
GTGGTCGCCA TCTGGGCGGT GGAAGGCGCA CTGCTCCTCG GCATCATCAT GGTTGTCGTG
ACGGCGTTCA ACCGCGTGCG CGAGCGCTTC GCGATCGGCA CCAAGGCTGC GGTGGCGGGC
GCGCTGCTGG CCTCGTTGAA CACGGCGTCG GAATACGGTT TTGGTGGCGT GATTGCCGCG
TTGCCGGGCT TTCTGGTGGT CAGCAACGCG TTGAAGAGCA TTCCCAATCC GCTCGTCAAT
GCAGCTGTTT CGGTGAGCTC GCTGGCGGGC ATCACCGGTT CGGCGTCGGG CGGCATGAGC
ATCGCGCTCG CGGCCATGTC GGACACGTTC ATCAAGGGCG CGGAAGCGGC GCATATTCCG
ATGGAAGTGC TACACCGGGT CGTCGCCATG GCGAGCGGCG GCATGGACAC GCTGCCGCAC
AACGGCGCGG TGATCACGCT GCTGGCCGTC ACGGGCTTGA CGCATCGGCA GTCGTATCGC
GACATCTTCG CGGTCACGGT CATCAAGACG ATGGCAGTGT TCTTTGTGAT CGCGGTTTAT
TACGCGACGG GTCTGGTCTG A
|
|---|
| Protein sequence | MSFVIVLAAL AFLMFAAYRG YSVILFAPIA ALGAVLLTDP AAVAPVFTGI FMEKMVGFVK
LYFPVFLLGA VFGKVIELSG FSESIVAAAI RYIGRSRANA VIVAVCALLT YGGVSLFVVV
FAVYPFAAEL YRQSNIPKRL MPGAIALGAF SFTMDSLPGT PQIQNIIPTT FFKTTSWAAP
ALGVIGSLFI IVVGLTYLEW RRRSAMATGE GYGTELVNEP DRVESKQLPH PLLAVAPLVL
VGVANFLLTR WIPNWYGASY TVAPDILPGV HAPVTTTIKA VVAIWAVEGA LLLGIIMVVV
TAFNRVRERF AIGTKAAVAG ALLASLNTAS EYGFGGVIAA LPGFLVVSNA LKSIPNPLVN
AAVSVSSLAG ITGSASGGMS IALAAMSDTF IKGAEAAHIP MEVLHRVVAM ASGGMDTLPH
NGAVITLLAV TGLTHRQSYR DIFAVTVIKT MAVFFVIAVY YATGLV
|
|---|
| |