Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6854 |
Symbol | sdhA |
ID | 6278435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3204789 |
End bp | 3206564 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642617881 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001890517 |
Protein GI | 187921485 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.232059 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGCAA TCAAGAATTC TCTGCCGCGT CGCAAGTTTG ACGTGGTTAT CGTCGGCGCA GGCGGCTCGG GGATGCGCGC TTCGCTGCAA CTCGCGCGCG CCGGTCTGTC GGTCTGCGTG CTGTCCAAAG TGTTCCCGAC GCGATCGCAC ACGGTTGCTG CTCAAGGCGG CATCGGCGCA TCGCTTGGCA ACATGAGCGA AGACAATTGG CACTACCACT TCTACGACAC GATCAAGGGT TCCGACTGGC TCGGCGACCA GGACGCGATC GAGTTCATGT GCCGCGAAGC ACCGAACGCC GTGTACGAAC TCGAACACAT GGGCATGCCG TTCGACCGTA ACGCGGACGG CACGATTTAC CAGCGCCCGT TCGGCGGCCA CACCGCGAAC TACGGCGAAA AGCCGGTGCA ACGCGCTTGC GCGGCGGCTG ACCGCACCGG TCACGCGCTG CTGCACACGC TGTATCAGCA AAACGTCGAG GCCAAGACGC AGTTCTTCGT CGAATGGATG GCGCTGGATC TGATCCGCGA CTCCGAAGGC GACGTGCTCG GCGTGACCGC GCTGGAAATG GAAACCGGCG ACGTCTACAT TCTCGAAGGC AAGACCACGC TGTTCGCCAC GGGCGGCGCG GGCCGGATCT TCGCGGCATC CACCAACGCG TTCATCAACA CCGGCGACGG TCTGGGCATG GCGGCGCGTT CGGGCATCGC GCTGCAAGAC ATGGAATTCT GGCAATTCCA CCCGACCGGC GTGGCCGGTG CGGGCGTGCT GATTACCGAA GGCGTGCGCG GCGAAGGCGG CATTCTGCGC AACTCGAACG GCGAGCGTTT CATGGAACGC TACGCGCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGTTC GATGGACCAG GAAATCAAGG AAGGCCGCGG CGTGGGTCCG AACAAGGATC ATGTGCTGCT CGACCTGTCG CACATTGGCG CCGAGACGAT CATGAAGCGT CTGCCGTCGA TCCGCGAAAT CGCGCTGAAG TTCGCGAACG TCGATTGCAT TAAAGAACCG ATCCCGGTCG TGCCGACCAT CCACTATCAG ATGGGCGGTA TTCCGACGAA CATCAACGGC CAGGTCGTGG GTACGTCGAG GGGCGCTGAA GATCCGGTCA ACGGCTTCTA CGCAGTGGGC GAATGCTCGT GCGTGTCGGT GCACGGTGCA AACCGTCTCG GCACGAACTC GCTGCTCGAC CTGGTGGTGT TCGGCCGCGC GGCCGGCAAC CACATCGTCA AGCACGTGAA GGAAATCAAG GAGCACAAGC CGCTGCCGGC CGACGCCGCT GATTTCGCGC TGTCGCGTCT GGCGAAGCTC GACAGCTCGT CTTCGGGCGA GTACGCGCAA TCGGTCGCGA ACGACATTCG CGGCACGATG CAGAAGCACG CCGGCGTGTT CCGCACCTCA GCGCTGCTGG CCGAGGGCGT GGAGCGCATT CGCGAAGTGG CTGACCGTGT CGACAACATC CATTTGAAGG ACAAGTCGAA GGTGTTCAAC ACCGCGCGCG TCGAAGCGCT GGAAGTGGCG AACCTGATCG AAGTGGCACG CGCCACGATG GTTTCCGCCG AAGCGCGTAA AGAAAGCCGT GGCGCGCACG CGCAAAACGA CTTCGAACAT CGCGACGACG AAAACTGGAT GCGCCATACG CTGTGGTTCA GCGAAGGCGA TCGCCTTGAC TACAAGCCGG TTCACATGCA ACCGCTGACG GTCGAATCGG TTCCGCCGAA AGCGCGGACC TTCTAA
|
Protein sequence | MAAIKNSLPR RKFDVVIVGA GGSGMRASLQ LARAGLSVCV LSKVFPTRSH TVAAQGGIGA SLGNMSEDNW HYHFYDTIKG SDWLGDQDAI EFMCREAPNA VYELEHMGMP FDRNADGTIY QRPFGGHTAN YGEKPVQRAC AAADRTGHAL LHTLYQQNVE AKTQFFVEWM ALDLIRDSEG DVLGVTALEM ETGDVYILEG KTTLFATGGA GRIFAASTNA FINTGDGLGM AARSGIALQD MEFWQFHPTG VAGAGVLITE GVRGEGGILR NSNGERFMER YAPTLKDLAP RDFVSRSMDQ EIKEGRGVGP NKDHVLLDLS HIGAETIMKR LPSIREIALK FANVDCIKEP IPVVPTIHYQ MGGIPTNING QVVGTSRGAE DPVNGFYAVG ECSCVSVHGA NRLGTNSLLD LVVFGRAAGN HIVKHVKEIK EHKPLPADAA DFALSRLAKL DSSSSGEYAQ SVANDIRGTM QKHAGVFRTS ALLAEGVERI REVADRVDNI HLKDKSKVFN TARVEALEVA NLIEVARATM VSAEARKESR GAHAQNDFEH RDDENWMRHT LWFSEGDRLD YKPVHMQPLT VESVPPKART F
|
| |