| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6788 |
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| Symbol | |
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| ID | 6278249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3125085 |
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| End bp | 3127826 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642617817 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001890453 |
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| Protein GI | 187921421 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0147599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000170009 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAG AACGAAGCCT TGAAGGTAAG ACCCTGCTAT TGGTCGACGG TTCGAGTTAT
CTGTACCGGG CCTACCATGC GATGCCGGAT CTGCGCAGCC CCGACGGTAA TCCGACGGGA
GCGCTCTACG GGATGATCAA CATGCTTCGG CGCATGCGCA AGGAAGTCAC TGCAGAGTAT
AGCGCGTGCG TGTTCGACGC CAAGGGCAAA ACGTTTCGCG ACGACTGGTA TCCCGACTAT
AAGGCGAACC GCCCGTCGAT GCCCGACGAC CTCTCGCGCC AGATCGAGCC GATTCACGTG
GCCGTGCGGG CGCTCGGCTG GCCCTTGCTG ATGATAGACG GCGTCGAGGC CGACGACGTC
ATCGGCACCC TCAGCACGCA AGCGGAAAAG CGTGGCATGA ATGTGATCGT GTCGACGGGT
GACAAGGATC TGGCGCAGCT TGTGTCGGAT CATGTCACCC TCATCAATAC GATGACTAAC
GAAACGCTCG ACCGCGCCGG CGTGCTCGCC AAGTTCGGCG TGCCGCCGGA ACGCATTGTC
GACTACCTGT CGTTGATCGG CGATACCGTC GACAACGTGC CCGGCGTCGA GAAATGCGGG
CCGAAAACAG CGATCAAATG GCTGACGCAA TTCGATTCGC TAGATGGCAT CGTCGCACAT
GCGGACGAAA TCAAAGGTGC GGTAGGAGAC AATCTGCGCA GAGCGCTCGA TTTTCTGCCC
ATGGCGAAGA AACTCGTCAC CGTCGAGCGC AACTGCGACA TGACCGACCA CATCGTGTCG
ATCGAGGAAA GTCTGCAGAG CCGGCCGGAA TCGCGCGAGG AGTTGCGCGA GGTGTTCACG
CGCCACGGCT TCAAGACGTG GCTGCGTGAA GTGGAAATCG CAGATGCCGT GGAAGGCCCG
GAAACGGATG TGCCACCGGC TTTGTCCGTG GATCACGAGC GGCACTACGA CACCGTGCAG
ACGTGGGAAC AATTCGACGG GTGGCTCGAG AAGATCAACA CGGCCGAACT GACCTCGTTC
GATACGGAAA CCACCTCGCT CGACCCCATG ACTGCGCAGA TCGTGGGGCT GTCGTTGTCA
GTGGAAGCCG GCCGGGCAGC CTATGTGCCG CTCGCGCATC GCGGCCCGGA CGCGCCCGTG
CAATTGCCGC GCGACGAAGT CCTCGCCAGG CTCAAGCCGT GGCTCGAAAG CGCCGAGCAT
AAGAAGGTCG GTCAGCATCT CAAGTACGAC GAGCAGGTGC TGGCGAACTA CGGCATTGAA
ATGCGCGGTA TCGAACACGA CACGCTGCTT CAATCGTACG TGGTCGAATC GCATCGCACG
CATGATATGG ACAGCCTCGC GCTGCGCCAT CTCGGCGTGA AGACTATCAA ATACGAAGAG
GTGGCGGGCA AGGGCGCCGG GCAGATCGGC TTCGACGAAG TCGCGTTGGA CAAAGCCGCC
GAATACGCGG CGGAAGACGC CGACATCACC TTGCGCCTGC ACCAGGCGCT GTATCCGCAA
GTGACTGCGG AGAAGACACT TGAGTACGTG TATCGCGCGA TTGAACTGCC TACCTCGCGT
GTCCTGCGCA AGATGGAACG CACCGGCGTG CTGATCGACG CAGAGAAACT GCGTCTGCAA
AGCAGCGAAA TCGCGACGCG TCTGATCCAG CTGGAAAGCG AAGCGTATGT GCTGGCCGGC
GGCGAATTCA ACCTGGGTTC GCCAAAGCAG ATCGGGCAGA TCTTCTTCGA GAAGCTGGAG
TTGCCGGTCG TCAAGAAAAC GCCGAGCGGC GCGCCGTCCA CTGACGAAGA AGTGCTGCAA
AAGCTCGCCG AAGACTATCC GTTGCCGAAG ATCCTGCTCG AACACCGTGG CTTGTCGAAG
CTGAAGTCGA CCTACACCGA CAAGCTGCCG CGCATGGTCA ATGCCACTAC GGGCCGCGTG
CATACGAACT ATGCGCAGGC CGTGGCGGTC ACCGGGCGTC TGGCGTCGAA CGATCCGAAC
CTGCAGAATA TTCCGGTGCG TACCGGCGAA GGCCGCCGTA TTCGCGAAGC GTTTATCGCA
CCGCCCGGAC ACAAGCTGGT CTCGGCGGAT TATTCGCAGA TCGAATTGCG CATCATGGCG
CACATTTCCG GCGACGAGTC GCTGCTGCGC GCCTTCTCGC AGGGCGAAGA CATTCACCGC
GCCACCGCCG CGGAAATTTT CAGCGTGACG CCGCTCGAAG TGTCGAACGA TCAACGCCGC
GTGGCCAAGG TGATTAATTT TGGCCTGATC TACGGCATGA GTTCGTTCGG TTTGGCCGCA
AACCTCGGCA TCACGCGCGA CGCAGCCAAG CTCTATATCG ACCGCTATTT CGCGCGTTAT
CCGGGCGTGG CGCGTTATAT GGACGAAACA CGCGTGAGCG CGAAGGCCAA GGGTTACGTC
GAGACGGTGT TCGGCCGCCG CCTGTGGCTG CCGGAGATCA ACGGCGGCAA TGGTCCGCGT
CGTCAAGCGG CTGAGCGCGC CGCGATCAAC GCGCCGATGC AAGGCACCGC CGCGGATCTG
ATCAAGCTCT CCATGATCGC GGTGCAGAAC TGGATCGAAG AGTCGAAGAT CGGCACGCGC
ATGATCATGC AAGTGCATGA TGAATTGATC CTCGAAGTAC CGGATGCGGA ATTGTCCGAC
GTCCGCAAGC GCTTGCCCGA GTTGATGTGC GGTGTCGCCG ACCTGAAAGT GCCGCTGGTC
GCCGAAGTGG GCGCCGGCCT GAACTGGGAA GAAGCGCATT GA
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| Protein sequence | MPEERSLEGK TLLLVDGSSY LYRAYHAMPD LRSPDGNPTG ALYGMINMLR RMRKEVTAEY
SACVFDAKGK TFRDDWYPDY KANRPSMPDD LSRQIEPIHV AVRALGWPLL MIDGVEADDV
IGTLSTQAEK RGMNVIVSTG DKDLAQLVSD HVTLINTMTN ETLDRAGVLA KFGVPPERIV
DYLSLIGDTV DNVPGVEKCG PKTAIKWLTQ FDSLDGIVAH ADEIKGAVGD NLRRALDFLP
MAKKLVTVER NCDMTDHIVS IEESLQSRPE SREELREVFT RHGFKTWLRE VEIADAVEGP
ETDVPPALSV DHERHYDTVQ TWEQFDGWLE KINTAELTSF DTETTSLDPM TAQIVGLSLS
VEAGRAAYVP LAHRGPDAPV QLPRDEVLAR LKPWLESAEH KKVGQHLKYD EQVLANYGIE
MRGIEHDTLL QSYVVESHRT HDMDSLALRH LGVKTIKYEE VAGKGAGQIG FDEVALDKAA
EYAAEDADIT LRLHQALYPQ VTAEKTLEYV YRAIELPTSR VLRKMERTGV LIDAEKLRLQ
SSEIATRLIQ LESEAYVLAG GEFNLGSPKQ IGQIFFEKLE LPVVKKTPSG APSTDEEVLQ
KLAEDYPLPK ILLEHRGLSK LKSTYTDKLP RMVNATTGRV HTNYAQAVAV TGRLASNDPN
LQNIPVRTGE GRRIREAFIA PPGHKLVSAD YSQIELRIMA HISGDESLLR AFSQGEDIHR
ATAAEIFSVT PLEVSNDQRR VAKVINFGLI YGMSSFGLAA NLGITRDAAK LYIDRYFARY
PGVARYMDET RVSAKAKGYV ETVFGRRLWL PEINGGNGPR RQAAERAAIN APMQGTAADL
IKLSMIAVQN WIEESKIGTR MIMQVHDELI LEVPDAELSD VRKRLPELMC GVADLKVPLV
AEVGAGLNWE EAH
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