| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6781 |
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| Symbol | |
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| ID | 6279294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3116821 |
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| End bp | 3118782 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642617810 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001890446 |
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| Protein GI | 187921414 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.772471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0000939262 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGGCGCA TGTATGAAGT GCGGGCGCGT AAGTTTTCCT ACAATGGAAC GACGATGTAC
GACTTGCTGA AAACCATTGA CGACCCGGCA GCCTTGCGCC GCCTCGATCG CCGCCAATTG
CAACCGCTTG CCGACGAGTT GCGTGCCTTC GTGCTCGACA GCGTATCGCA GACGGGCGGC
CATCTTTCGT CCAACCTCGG CACGGTCGAG TTGACCATTG CTCTGCACTA TGTGTTCGAC
ACGCCGCGCG ACCGGATCGT CTGGGACGTC GGCCATCAAA CCTATCCGCA CAAGATCCTG
ACGGGCCGCC GCGACCAGAT GCACACGCTG CGTCAACTCG GCGGCATCTC GGGCTTCCCG
AAGCGTGACG AGTCGGAATA CGACACGTTC GGCACGGCGC ACTCCAGCAC GTCGATTTCC
GCCGCGCTCG GCATGGCGAT CGCGAGCAAG CTGCAGGGCG ACAACCGCAC GGGCATCGCC
GTGATCGGCG ACGGTGCAAT GACGGCCGGT ATGGCGTTCG AGGCGATGAA CAACGCCGGC
GTCGAAGACG ACGTGCCGTT GCTGGTCATC CTGAACGATA ACGACATGTC GATTTCGCCG
CCGGTCGGCG CGCTGAATCG CCATTTGGCG CGCCTGATGT CGGGCCGCTT CTACGCCGCC
GCGCGTGCCG GTGTTGAACG CGTGCTGCGC GTCGCGCCGC CTATGCTCGA TCTCGCCCGC
AAGCTCGAAG AGCACGCCAA GGGCATGATC GTGCCAGCCA CGCTGTTTGA AGAGTTCGGC
TTCAACTACA TCGGCCCGAT CGACGGTCAC GATCTCGATT CGCTGATCCC GACGCTGCAG
AACATCAAGG AACTGCGCGG TCCGCAATTC CTGCACGTCG TGACGAAGAA AGGCCAAGGC
TACAAGCTGG CCGAAGCCGA TCCGGTGCTG TATCACGGGC CGGGCAAGTT CAATCCGGCT
GAAGGCATCA AGCCGGCCAC CACGCCGTCG AAGAAGACCT ATACGCAGGT GTTCGGCGAA
TGGTTGTGCG ACGCGGCCGA GCTGGATGCA CGTGTGGTCG GCATCACGCC GGCCATGCGC
GAAGGCTCGG GCATGGTGGA GTTCGAGAAG CGCTTCCCGG ACCGTTACTT CGACGTCGGT
ATCGCCGAGC AACATGCGGT GACGTTCGCC GGCGGTTTGG CCGCGGAAGG CATGAAGCCG
GTGGTCGCGA TCTACTCGAC CTTCCTGCAA CGCGCCTACG ATCAGCTGAT TCACGACGTC
GCGCTGCAGA ACCTGCCGGT GGTGTTCGCG ATCGACCGGG CGGGTCTGGT CGGCGCGGAC
GGCGCAACGC ACGCGGGTGC TTACGACCTG GCGTTCCTGC GCTGCATCCC GAACATGACG
GTGATGGCCG CCTCGGACGA AAACGAATGC CGCCAGATGC TGTACACGGC ATTGCAACAG
CCGAACCCGA CGGCGGTGCG TTATCCGCGC GGCGCCGGCA CGGGCGTCGC CACGGTCAAG
CAGATGGCGG CGCTGCCGCT CGGCAAGGGT GAGATTCGTC GCGAAACGTC GCAGCCGGCC
GGCAAGCGTA TTGCGATTCT GGCGTTTGGC ACGATGGTCG CGCCGTCGCT GGCAGCCGCC
GAGCAACTGG ACGCGACGGT TGCCAACATG CGCTTCGTGA AGCCGCTCGA CGCCGCTCTG
GTCCGTCAGC TGGCCGAAAC GCACGACGCT ATCGTCACAA TCGAAGAAGG CTGCGTGATG
GGCGGCGCGG GTTCGGCTTG CGTCGAAGCC CTGCTTGAAA GTGGGGTTAT GCGACCCGTA
CTACAATTGG GCCTTCCCGA TCGGTTCATC GATCATGGGG ACCCGGCCAA GCTGCTCGCC
GCGTGTGGTC TCGACGCCGC GGGTATCACC AAGTCGATCC GCGAGCGCTT CCTGTCGAGC
GGCGCGGTCG GCGGTCAGTC GTCGGTGAAG CGCGTCGCGT AA
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| Protein sequence | MRRMYEVRAR KFSYNGTTMY DLLKTIDDPA ALRRLDRRQL QPLADELRAF VLDSVSQTGG
HLSSNLGTVE LTIALHYVFD TPRDRIVWDV GHQTYPHKIL TGRRDQMHTL RQLGGISGFP
KRDESEYDTF GTAHSSTSIS AALGMAIASK LQGDNRTGIA VIGDGAMTAG MAFEAMNNAG
VEDDVPLLVI LNDNDMSISP PVGALNRHLA RLMSGRFYAA ARAGVERVLR VAPPMLDLAR
KLEEHAKGMI VPATLFEEFG FNYIGPIDGH DLDSLIPTLQ NIKELRGPQF LHVVTKKGQG
YKLAEADPVL YHGPGKFNPA EGIKPATTPS KKTYTQVFGE WLCDAAELDA RVVGITPAMR
EGSGMVEFEK RFPDRYFDVG IAEQHAVTFA GGLAAEGMKP VVAIYSTFLQ RAYDQLIHDV
ALQNLPVVFA IDRAGLVGAD GATHAGAYDL AFLRCIPNMT VMAASDENEC RQMLYTALQQ
PNPTAVRYPR GAGTGVATVK QMAALPLGKG EIRRETSQPA GKRIAILAFG TMVAPSLAAA
EQLDATVANM RFVKPLDAAL VRQLAETHDA IVTIEEGCVM GGAGSACVEA LLESGVMRPV
LQLGLPDRFI DHGDPAKLLA ACGLDAAGIT KSIRERFLSS GAVGGQSSVK RVA
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