| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6774 |
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| Symbol | |
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| ID | 6277947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3107904 |
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| End bp | 3109949 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642617803 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001890439 |
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| Protein GI | 187921407 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.669833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0681029 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAAA AGCTGAACGA AGTACCCGTC GATGACGACG CAACCCAAAG CGAAGAAAGC
CCCGCGGCTG CTGCTCCGGC CAAGGTGGAA AAGGCCAAGG CTCGCGATCG TCGTGCAAAG
GAAAAAGCGC TGCTGAAAGA CGCTTTCGCG TCGTCACAGC CGGGCACGGT CGAGGAACTC
GAGGAGCGCC GCTCCAAATT GCGCGCGCTG ATCAAGCTCG GCAAGGAGCG CGGCTTCCTC
ACGTACGCTG AGATCAACGA CCACCTGCCG GACAACTTCA CCGAGACCGA GGCGATCGAA
GGCATCATCA GCACGTTCAA CGACATGGGC GTGGCGGTGT ACGAGCAGGC CCCGGACGCT
GAAACGCTGC TGCTGAACGA CAACGCGCCA GCGGCTTCGT CCGACGACGA AGTGGAAGAG
GAAGCGGAAG TTGCGCTGTC CACCGTCGAC TCGGAATTCG GCCGCACTAC CGACCCGGTC
CGCATGTATA TGCGTGAAAT GGGCACGGTC GAGCTGCTCA CGCGCGAAGG CGAAATCGAA
ATCGCCAAAC GGATCGAAGA CGGCCTGAAG CACATGGTGA TGGCCATCTC CGCATGCCCG
ACCACGATCG CCGACATCCT GGCGATGGCG GAGCGCGTCG CGAATGAGGA AATTCGCATC
GACGAACTGG TCGACGGCCT GATCGACGCC AACGCGGAAG ACGCGGACGG TTTCTCCGCG
CAAGAAGCCG AAGCGATCGA GAGCGAAGAC GAAGAAGTCG AAGAAGACTC GGAAGAAGAC
GAGGAAGAAG ACGACGGCAC GGCGCAAGCC ACGGCTAACG CAGCGCAGAT GGAAGCGCTC
AAGCGTGCGT CGCTCGAAAA ATTCGCGATG ATCAGCGAAT GGTTCGACAA GATGCGTCGC
GCGTTCGAGA AGGAAGGCTA CAAGTCCAAG TCGTATCTGA AGGCACAAGA GACGATCCAG
AATGAGCTCA TGACGATCCG CTTCACCGCG CGTACCGTCG AGCGTCTGTG CGACACGCTG
CGTGCGCAGG TGGACGAAGT GCGTCAGGTC GAACGTCAGA TTCTGCACAC GGTGGTCGAC
AAGTGCGGCA TGCCGCGTGC GGAATTCATC GCGCGCTTCC CGGGCAGCGA AACGGATCTC
GAGTGGGCCG ATAAGATCGT CGGTGAAGGT CACGCCTATA GCGCGATCCT CACGCGAAAC
ATTCCGGCTA TTCGCGAACA GCAGCAACGT CTGCTGGATC TGCAGGCGCG GGTCGTGCTG
CCGTTGAAAG ACCTGAAGGA AACCAACCGT CAGATGGCGG CGGGCGAACT GAAGGCGCGT
CAGGCGAAGC GCGAAATGAC CGAGGCGAAC TTGCGTCTCG TGATCTCGAT CGCGAAGAAG
TACACGAACC GTGGTTTGCA GTTCCTGGAC CTGATTCAGG AAGGCAACAT CGGCCTGATG
AAGGCGGTGG ACAAGTTCGA ATACCGTCGC GGCTACAAGT TCTCCACGTA TGCAACGTGG
TGGATCCGTC AGGCCATTAC GCGTTCGATT GCCGACCAGG CGCGCACGAT CCGGATTCCG
GTTCACATGA TCGAAACGAT CAACAAGATG AACCGCATCT CGCGCCAGAT TCTGCAGGAA
ACCGGTCTCG AGCCGGATCC GGCAACGCTG GCCGAGAAGA TGGAAATGCC GGAAGACAAG
ATCCGCAAGA TCATGAAGAT CGCGAAGGAG CCGATCTCGA TGGAAACGCC GATCGGTGAC
GACGACGATT CGCATCTGGG CGATTTCATC GAAGACAACA ACACGGTTGC GCCGGCCGAC
GCCGCTTTGC ATGCGAGCAT GCGCGATGTC GTGAAGGACG TGCTCGACTC GCTGACTCCG
CGTGAAGCGA AGGTGCTGCG CATGCGTTTC GGTATCGAGA TGAGCACCGA TCACACGCTC
GAAGAAGTCG GCAAGCAGTT CGACGTGACG CGTGAACGGA TCCGTCAGAT CGAAGCGAAG
GCGCTGCGCA AGCTGCGCCA CCCGAGTCGT TCCGACAAGC TGAAGTCGTT CCTCGAAGGG
AATTGA
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| Protein sequence | MTKKLNEVPV DDDATQSEES PAAAAPAKVE KAKARDRRAK EKALLKDAFA SSQPGTVEEL
EERRSKLRAL IKLGKERGFL TYAEINDHLP DNFTETEAIE GIISTFNDMG VAVYEQAPDA
ETLLLNDNAP AASSDDEVEE EAEVALSTVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEDGLK HMVMAISACP TTIADILAMA ERVANEEIRI DELVDGLIDA NAEDADGFSA
QEAEAIESED EEVEEDSEED EEEDDGTAQA TANAAQMEAL KRASLEKFAM ISEWFDKMRR
AFEKEGYKSK SYLKAQETIQ NELMTIRFTA RTVERLCDTL RAQVDEVRQV ERQILHTVVD
KCGMPRAEFI ARFPGSETDL EWADKIVGEG HAYSAILTRN IPAIREQQQR LLDLQARVVL
PLKDLKETNR QMAAGELKAR QAKREMTEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKM NRISRQILQE
TGLEPDPATL AEKMEMPEDK IRKIMKIAKE PISMETPIGD DDDSHLGDFI EDNNTVAPAD
AALHASMRDV VKDVLDSLTP REAKVLRMRF GIEMSTDHTL EEVGKQFDVT RERIRQIEAK
ALRKLRHPSR SDKLKSFLEG N
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