Gene Bphyt_6626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6626 
Symbol 
ID6278779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2936300 
End bp2937826 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content66% 
IMG OID642617658 
ProductRND efflux system, outer membrane lipoprotein, NodT family 
Protein accessionYP_001890295 
Protein GI187921263 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTGC CGCGCGCCCT GCCCTTATTG CCGTTGCTGC CTCTGCTGCC GTTGGCGGTT 
GCGCTCAACG GCTGCATGAA CGTCGGTCCC AACTACTCGC TGCCGCAACA GGCGCTCGTC
AACGCTCCGC TTGCCAACGC GCCGATCGAA GGCGCTGACA CGTCCCTCAC GACGCGCCAG
AGCGTGCCGC CCGTATGGTG GAAGCTGTAC GACGATCCGG TGCTGAACGG ACTCGTCGAC
CAGGCGCTGC AATCGAACAC CGACTTGCGC GTCGCGGCGG CTAATCTTGC GCGCTCGCGT
GAAGCGTTGG GTGTAGCGCA GGCACAGGGC GGTTTTTCCG GCAAGAGTTC GGCGGTAATC
GAACGCGCGC AGGAATCCGC CGAGCAATAC TTGCTCACCG AAAAGCTGCC GGTCGTCAAC
GAAGGCGATA TCGGCATCAG CATCTCGTAT GAAATCGATC TGTTCGGCAA GTTGCGGCGC
GGCGTGGAAG CGGCGCAAGC GGACACCGAG TCGGTACAGG CCGCCGCCGA TCTCGCGCGG
ATCACCGTAG TGGCGGACGT GGTGCGCTCT TACGTCGAGC AATGTTCGGC CGCCGAGGAA
CTCAGGATCG CGCAACAGTC GCTGGCGCTG CAGAAACAGC GCGTGGACGT CTCGCGCCGC
CTGCGCGACG CGGGCCGCGG CAATCAACCC GACGTAACGC GTGGGCAGAC CCAGGTCGAT
ACGTTGTCGG CGGATATCCC GCGTTATATG GCGCGTCGCA AGATCGCGCA GTACCGGCTC
GCGGCGCTGC TCGCGCGCGC GCCTTCGGAT CTGCCGCCGG CCGTGCTCGC GTGCGACAGG
CTGCCGCAAC TGCGCCAGCC GATTCCGATC GGCGACGGCG CCGCGCTGCT CAAGCGCCGG
CCGGATGTGC GCGAGGCTGA GCGTGAATTG GCGGCATCCA CGGCGCGGAT CGGTGTCGCT
ACCGGAGCGC TGTATCCGAC GGTGAGCATC GGTGCGTCGG CGGGCTTGAC CGGCGTTCTG
GAAGACCTCG GCACATCGCC CACGGCGCGC TGGGGCTTCG GTCCGTTGAT CAGTTGGCAG
TTCCCCACGA ACGGTGCGCG TGGCCGTGTG CGTGAAGCGC AGGCGTCGAG CCAGGTGGCG
TTGGCGAAGT TCGATGGCGT GGTGCTGACC GCGTTGCGCG AAACCGAAAC CAATCTCGCG
ACCTATTCGT CGGATTACGC ACGCGCCGAT GCGCTGCGTG CCGCGGTCAA GTCGGCGAGC
GAGTCCGCGG ATGAAACGCA CCGGCTGTAT CGCGCGGGAC GTGAGTCGTT TATTTCGGAT
CTGGATGCGA CGCGCACGTT GACGTCCACG AAGTCTCAGG CAGCAGCTGC GGAGGGTCAG
GTGGCCATCG ATCAGGTCAA CCTGTTCCTC GCGCTTGGTG GCGGTTGGGA AGTTGATCCG
CGGAATGCTT CGGTTGGTTC CACGTCTGCG GCGGCGGTGC CGGTCAAGGC AACGCCAACG
GTTGCAACGA AAGCGAAAGC GCCTTGA
 
Protein sequence
MKLPRALPLL PLLPLLPLAV ALNGCMNVGP NYSLPQQALV NAPLANAPIE GADTSLTTRQ 
SVPPVWWKLY DDPVLNGLVD QALQSNTDLR VAAANLARSR EALGVAQAQG GFSGKSSAVI
ERAQESAEQY LLTEKLPVVN EGDIGISISY EIDLFGKLRR GVEAAQADTE SVQAAADLAR
ITVVADVVRS YVEQCSAAEE LRIAQQSLAL QKQRVDVSRR LRDAGRGNQP DVTRGQTQVD
TLSADIPRYM ARRKIAQYRL AALLARAPSD LPPAVLACDR LPQLRQPIPI GDGAALLKRR
PDVREAEREL AASTARIGVA TGALYPTVSI GASAGLTGVL EDLGTSPTAR WGFGPLISWQ
FPTNGARGRV REAQASSQVA LAKFDGVVLT ALRETETNLA TYSSDYARAD ALRAAVKSAS
ESADETHRLY RAGRESFISD LDATRTLTST KSQAAAAEGQ VAIDQVNLFL ALGGGWEVDP
RNASVGSTSA AAVPVKATPT VATKAKAP