Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6626 |
Symbol | |
ID | 6278779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 2936300 |
End bp | 2937826 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642617658 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001890295 |
Protein GI | 187921263 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTGC CGCGCGCCCT GCCCTTATTG CCGTTGCTGC CTCTGCTGCC GTTGGCGGTT GCGCTCAACG GCTGCATGAA CGTCGGTCCC AACTACTCGC TGCCGCAACA GGCGCTCGTC AACGCTCCGC TTGCCAACGC GCCGATCGAA GGCGCTGACA CGTCCCTCAC GACGCGCCAG AGCGTGCCGC CCGTATGGTG GAAGCTGTAC GACGATCCGG TGCTGAACGG ACTCGTCGAC CAGGCGCTGC AATCGAACAC CGACTTGCGC GTCGCGGCGG CTAATCTTGC GCGCTCGCGT GAAGCGTTGG GTGTAGCGCA GGCACAGGGC GGTTTTTCCG GCAAGAGTTC GGCGGTAATC GAACGCGCGC AGGAATCCGC CGAGCAATAC TTGCTCACCG AAAAGCTGCC GGTCGTCAAC GAAGGCGATA TCGGCATCAG CATCTCGTAT GAAATCGATC TGTTCGGCAA GTTGCGGCGC GGCGTGGAAG CGGCGCAAGC GGACACCGAG TCGGTACAGG CCGCCGCCGA TCTCGCGCGG ATCACCGTAG TGGCGGACGT GGTGCGCTCT TACGTCGAGC AATGTTCGGC CGCCGAGGAA CTCAGGATCG CGCAACAGTC GCTGGCGCTG CAGAAACAGC GCGTGGACGT CTCGCGCCGC CTGCGCGACG CGGGCCGCGG CAATCAACCC GACGTAACGC GTGGGCAGAC CCAGGTCGAT ACGTTGTCGG CGGATATCCC GCGTTATATG GCGCGTCGCA AGATCGCGCA GTACCGGCTC GCGGCGCTGC TCGCGCGCGC GCCTTCGGAT CTGCCGCCGG CCGTGCTCGC GTGCGACAGG CTGCCGCAAC TGCGCCAGCC GATTCCGATC GGCGACGGCG CCGCGCTGCT CAAGCGCCGG CCGGATGTGC GCGAGGCTGA GCGTGAATTG GCGGCATCCA CGGCGCGGAT CGGTGTCGCT ACCGGAGCGC TGTATCCGAC GGTGAGCATC GGTGCGTCGG CGGGCTTGAC CGGCGTTCTG GAAGACCTCG GCACATCGCC CACGGCGCGC TGGGGCTTCG GTCCGTTGAT CAGTTGGCAG TTCCCCACGA ACGGTGCGCG TGGCCGTGTG CGTGAAGCGC AGGCGTCGAG CCAGGTGGCG TTGGCGAAGT TCGATGGCGT GGTGCTGACC GCGTTGCGCG AAACCGAAAC CAATCTCGCG ACCTATTCGT CGGATTACGC ACGCGCCGAT GCGCTGCGTG CCGCGGTCAA GTCGGCGAGC GAGTCCGCGG ATGAAACGCA CCGGCTGTAT CGCGCGGGAC GTGAGTCGTT TATTTCGGAT CTGGATGCGA CGCGCACGTT GACGTCCACG AAGTCTCAGG CAGCAGCTGC GGAGGGTCAG GTGGCCATCG ATCAGGTCAA CCTGTTCCTC GCGCTTGGTG GCGGTTGGGA AGTTGATCCG CGGAATGCTT CGGTTGGTTC CACGTCTGCG GCGGCGGTGC CGGTCAAGGC AACGCCAACG GTTGCAACGA AAGCGAAAGC GCCTTGA
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Protein sequence | MKLPRALPLL PLLPLLPLAV ALNGCMNVGP NYSLPQQALV NAPLANAPIE GADTSLTTRQ SVPPVWWKLY DDPVLNGLVD QALQSNTDLR VAAANLARSR EALGVAQAQG GFSGKSSAVI ERAQESAEQY LLTEKLPVVN EGDIGISISY EIDLFGKLRR GVEAAQADTE SVQAAADLAR ITVVADVVRS YVEQCSAAEE LRIAQQSLAL QKQRVDVSRR LRDAGRGNQP DVTRGQTQVD TLSADIPRYM ARRKIAQYRL AALLARAPSD LPPAVLACDR LPQLRQPIPI GDGAALLKRR PDVREAEREL AASTARIGVA TGALYPTVSI GASAGLTGVL EDLGTSPTAR WGFGPLISWQ FPTNGARGRV REAQASSQVA LAKFDGVVLT ALRETETNLA TYSSDYARAD ALRAAVKSAS ESADETHRLY RAGRESFISD LDATRTLTST KSQAAAAEGQ VAIDQVNLFL ALGGGWEVDP RNASVGSTSA AAVPVKATPT VATKAKAP
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