| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6606 |
|---|
| Symbol | |
|---|
| ID | 6278998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2912776 |
|---|
| End bp | 2914692 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642617639 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001890276 |
|---|
| Protein GI | 187921244 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.213555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.251214 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCTG CCGCGTTATC GCGCGTCGCC GACCGCCTTC TAGCTGCGGA CCCGGGACTC
GTGCGCCTCC ATACCGCGCT GCGCGTCGCG CTCGCCTGCC TGCTCACCGG CCTGGCCAGT
ATCGCGTGGA CCGTTTCCCA AGATCAGTCC ATTACGCTCG CGGCACCCGG CATCCTCTTT
GCGATGGTCG CGCCGTTGTT CGTGCGCGAT GCACGGCGGA CTGCCTGGTT CGGCACGCTC
TTCTATCTTT ATCTTTGCGC TTGCGTGTGC TTTGCCATGG CGAGCGTGTT GAGCCGTTAT
CCGCTGGCCG GCGATGCGGG CTTCCTGGTG GTGATGTTCG TCGGCATGCT GTGCCAGGCA
TGCGGACCGC GCGCATTGGG CTGCGCGATG CTGGGCGTCG TGTGTTTTTA TCTCGGCCTC
TATCTTCATC CTTCGACGGC GCATGTCGTG CAGTCGCTTC TGCTGTCCGC GTTCGGCCCC
TTGATGGTCG TGCTGGTGGG CCGCGTGATC GTGCCGATGC GAGTCGCGGC AAGTTTTCGC
CTCGCCGTTC ATACGGTGAC GCTGCGCGCG TCGCGTGTGC TTCACGCTCC GGTTGCCGCG
CATCTCTCCG CGTTGAACGA AGCTGCGCTC TCGCTCGAAG AACAGTTGGC GCTGCTGAAT
CCGTCGAATG CGGAGACGAT TCGTGAGCGG ATCGTCGAAG TGGAAGTGGC GGCTGGGCAG
TACGCGTTTG CATCCGGACC CGCGGATGAT GCTGTCAAGG CGCGTGGCGA TGTATTACGT
CACGCGATTG CGCGGCTCAA GGAGATTGCG CAGCGAAGCG CCACGCGACG CGATTCGTCC
GCACTAACGG GCGCTTTCGT TACGCTGACC GCGCCGCAGC GCTTCGCCGA TTTGCGCAGC
AAACTCTGCT GGCTCCCCGC CACGCGCGCC ACGACCGCTG CATTGCTAGC GATGCTGATC
GGCCATTCGC TTTCGCCGGA GCGTTGGTTC TGGGCGGTCA TTACGACGTT CGTCGTGTTT
CTCGGCACGC GGTCGCGCGC GGATACGGTG TATCGCGGCG CGCAGCGCCT CGTGGGGACG
CTCGCCGGCG CGCTCGTCAG CGTATTGCTG GTCGCGCCGC TGCATGACTC GCCGGTATTG
CTGGTGATCG CGATGGTGTT GTGCGTGTTC GGCTGGGCTT ACTACATCTT GAGCGCGTAT
GCGCCGGGGG TGTTTTTTAT CACCGTGCTC GTCGGCCTGG TCTACGGCGA GTTGGGGTTC
GCGATGGGGC CGCTGGTCGA ACTGCGAATC GAAGAAGTGC TGGTGGGTTG CCTTGTGTCT
TTCGCCGTCG CCATACTCAT GATGCCGCTT GCAGCGACGC GGCATGTCGA GGCGAGACTT
GCGGCGGTGC TGGGCGCGCT ACGCGACGTG GTGCGGCTCT CCGGGGCAGG TCCGCAAGCT
GCTGAAGCGG TTGTGGCGAT GCGTAAGCTC GATCGCAGTT GGCATGATCT GCGGATCGCG
CTGCGGCCAC TGCAGACGCA ACGCGTGGTG GTGTGGAACC CGGATGTCGA GCTGGCGACC
GGGTCGCTGC TATGTTGCCT GCATTGGGCG CGCGTGCTGA ATGGGCCCGC GCGACGCGAC
GGGTTGCAGG ACGCGGTGGC GCTTAACGCG GCAGAGGTGG GTGCGGCGCA TGTCGAGTCG
ATCGTGGCGC GGCTTGATAC TTTGATTGCG CGTTATGGCG GCGGTGTGGG GGGCGCTGCG
CGCAATGAAT CGGATGAACG TGGACCGATG ATGCCCGCCA TTGCTTTCGA TGTGAACAGG
GCACCGGCAC TTGCGCAATT GGATGGCGCT GTCGCGCAGT TGTTCGATCG GTTGATGCAG
CCGGTTTCGG ATACGCGGCG GGTTTTCAAT TGGGAGGTGC GGGGAAGGGG TGTGTAG
|
|---|
| Protein sequence | MIAAALSRVA DRLLAADPGL VRLHTALRVA LACLLTGLAS IAWTVSQDQS ITLAAPGILF
AMVAPLFVRD ARRTAWFGTL FYLYLCACVC FAMASVLSRY PLAGDAGFLV VMFVGMLCQA
CGPRALGCAM LGVVCFYLGL YLHPSTAHVV QSLLLSAFGP LMVVLVGRVI VPMRVAASFR
LAVHTVTLRA SRVLHAPVAA HLSALNEAAL SLEEQLALLN PSNAETIRER IVEVEVAAGQ
YAFASGPADD AVKARGDVLR HAIARLKEIA QRSATRRDSS ALTGAFVTLT APQRFADLRS
KLCWLPATRA TTAALLAMLI GHSLSPERWF WAVITTFVVF LGTRSRADTV YRGAQRLVGT
LAGALVSVLL VAPLHDSPVL LVIAMVLCVF GWAYYILSAY APGVFFITVL VGLVYGELGF
AMGPLVELRI EEVLVGCLVS FAVAILMMPL AATRHVEARL AAVLGALRDV VRLSGAGPQA
AEAVVAMRKL DRSWHDLRIA LRPLQTQRVV VWNPDVELAT GSLLCCLHWA RVLNGPARRD
GLQDAVALNA AEVGAAHVES IVARLDTLIA RYGGGVGGAA RNESDERGPM MPAIAFDVNR
APALAQLDGA VAQLFDRLMQ PVSDTRRVFN WEVRGRGV
|
|---|
| |