| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6020 |
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| Symbol | |
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| ID | 6278004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2248178 |
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| End bp | 2250388 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642617080 |
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| Product | capsular exopolysaccharide family |
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| Protein accession | YP_001889723 |
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| Protein GI | 187920691 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.242551 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAC TTGATCGGGA ACGCTCGGCC GACGCGCTGG GCGAAAAGGA AATCACGCTG
TCCGAGGTCA TCGCATTGTT GAGCGAGAAT CGGCTTTTGA TCGCGTTGAC CACTGCGGCA
ATGCTATTTC TCGGCATTGC CTATGCATTT TTCGGCACGC CTTTGTACAA AGCCGATGTA
ACGATTCAGG TCGACAGCAA CTCAGGCAGC GACACGCTCA ACGACAAGCT CGGCGAGCTC
GCGTCGTTGT TCCAAAGCAA GGCATCGACC GACGCGGAGA TTGAACTGAT CCGTTCGCGA
ATGGTAGTCG AAGAAACTGT CCGGAGTTTG CAGCTCGACG TCAACGCGAC GCCACACCGA
TTTCCGCTGA TTGGCGCGCT GATCGCACGG CAGGCACTCC CTGGCAGTCC AGCGAGCGCC
TTCCTGGGGT TAAGCAGTTT CGCCTGGGGC GGGGAGACTT TAGGCGTGGC TCAATTCGAC
GTTCCCGCTG CGCTCTACGA TCAGCCTTTC AAATTGATGG TCGGAGCCGG GCAGGCGTTC
GAACTGCGCG ATGCGGACGG CCATACGGTG CTGCGCGGCC ACGTGGGCAT TGCGGAGCAG
GGCGTCACAC GGTTCGGGTC TGTTCAGTTG AGAGTGGATC ATATGATTGC GCGCGTCGGC
ACGTCGTTCA ATCTGAAGAG GTCCTCGACG CAGCTGACGA CAGCGGATCT GCAAAGCGCG
CTCAATATCA ACGAGAAGGC CAAACAGTCG GGCATAGTCG CAGTCTCGCT CGAAGGCGAG
GATGCTGCGA GGACCGCAGC TACCGTGAAC CGTGTGGCGA GCATTTACGT TCAGCGAAAT
GTAGACCGCA AGTCCGCGCA AGCGCAGCAA ATGCTGCAGT TTCTCGCTGA CCAACTTCCC
CAACTACGCG CAGACCTCGA CGACGCTGAA GCCAGATATA ACGCGTTCCG CACGCAGAAC
GGCACTGTCG ATCTGGAAAC AGAAGGCAAG CTCCTGTTGC AATCGATTGT CGACAGCAAA
ACTAAACTGA TCGAGTTGCA GCAGCAACGC TCCGCGCTCG CGCAGCGATA CACGGTGGAA
CACCCGTCTA TCCAGGCGAT TGATGCCCAG ATCGACGAAT TGCAGGAACA ACAACGCTCC
TTCGGCGCGA AAGTGGCGGC GTTGCCGAAC ATACAGCAAC AGGCGCTGCG TCTCATGCGC
GACGTGCGGG TCGACACCGA CCTGTACACC AAGCTGTTGG ATAGCACGCA GCAGTTGCGT
GTGCTTAAAG CGGGCCAACT GGGCAACGTC CACACGATCG ACTACGCGGA GGTGGCCGAA
AAAGCGGTCA AACCGAAGAA AGCACTGGTG ATCGCGCTTT CAGGCCTGAT CGGTGTGGTG
CTTGGATGCG CTATCGCATT TGTGCGCAGT ACTTTGAATC GTGGACTCGA GACGCCATCG
GAAATCGAAG GAGCGGTCGG CGTGCCGGTG TACGCGATCG TGTCTCGAAG CGCGCGGCAG
CGGACCTTGC AGCAGTCGGC TCGTGGCGGC GGGTCTGGGT TGAACGTGCT CGCGGTGGCT
CAACCTGATG ACGTGGCAGT GGAAGGCATC CGCAGTTTGA GAACGGCGTT GCAGTTCGGC
TTGCTCAAAT CGCACAACAA CATCGTGATG CTGACGGGGC CACGGCCGGA CGTCGGCAAG
TCGTTTCTCT CGGTGAATCT GGCCACGGTG CTGTCGGCTG GCGGTAAACG TGTGTTGCTA
GTCGACTCGG ACATGCGCCG AGGCGACGTG CACAGATACT TTTCGCTCCC GAGTAAACCG
GGCTTGTCCG ACGTGATCGG CGGAGTCGAG CCGTCAAGCG CGGTGCACTA CCAGGTCTTG
CCCCACCTCG ACGTACTGAT GAGTGGCAGC GTTGCCTCAA GTCCGGCCGA AATCCTGATG
AGCGATTCCT TCGGGAGCTT GCTCGCACAG TTCAGCAAGG AGTACGACGT GGTCATCGTT
GATTCGCCGC CGGTGTTGGC CGTGACCGAC CCGGTACTGA TCGGCAAGCA CGCGGGCCTG
ACGTTGCTCG TGATTCGTCA CGGGCGGCAC TCTGCCGCCG AACTCCAGGA AAGCGTGCGT
CAACTGAGTA GCGCCGGCCA TGCCGTCGAC GGCGTTCTGC TGAACGCTGT TCCACAGCGG
GCCAGTGCAT ACGGCGCGTT CTCCGAATAC GGGGCTGAAA AATCCGCATG A
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| Protein sequence | MKLLDRERSA DALGEKEITL SEVIALLSEN RLLIALTTAA MLFLGIAYAF FGTPLYKADV
TIQVDSNSGS DTLNDKLGEL ASLFQSKAST DAEIELIRSR MVVEETVRSL QLDVNATPHR
FPLIGALIAR QALPGSPASA FLGLSSFAWG GETLGVAQFD VPAALYDQPF KLMVGAGQAF
ELRDADGHTV LRGHVGIAEQ GVTRFGSVQL RVDHMIARVG TSFNLKRSST QLTTADLQSA
LNINEKAKQS GIVAVSLEGE DAARTAATVN RVASIYVQRN VDRKSAQAQQ MLQFLADQLP
QLRADLDDAE ARYNAFRTQN GTVDLETEGK LLLQSIVDSK TKLIELQQQR SALAQRYTVE
HPSIQAIDAQ IDELQEQQRS FGAKVAALPN IQQQALRLMR DVRVDTDLYT KLLDSTQQLR
VLKAGQLGNV HTIDYAEVAE KAVKPKKALV IALSGLIGVV LGCAIAFVRS TLNRGLETPS
EIEGAVGVPV YAIVSRSARQ RTLQQSARGG GSGLNVLAVA QPDDVAVEGI RSLRTALQFG
LLKSHNNIVM LTGPRPDVGK SFLSVNLATV LSAGGKRVLL VDSDMRRGDV HRYFSLPSKP
GLSDVIGGVE PSSAVHYQVL PHLDVLMSGS VASSPAEILM SDSFGSLLAQ FSKEYDVVIV
DSPPVLAVTD PVLIGKHAGL TLLVIRHGRH SAAELQESVR QLSSAGHAVD GVLLNAVPQR
ASAYGAFSEY GAEKSA
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