Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5955 |
Symbol | |
ID | 6277450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 2177395 |
End bp | 2178549 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642617017 |
Product | porin Gram-negative type |
Protein accession | YP_001889660 |
Protein GI | 187920628 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.144043 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAACAATA AAGTATTTGC CGCCGCTACT CTCGCCGTCT TCGCCACCGC CGCCCACGCG CAAAGCAGCG TCACGCTGTA TGGTGTGATC GACGCCGGTA TCAGCTACGT GAACAACTCG AAGACCGCAA CGGGTCACGA CAACCTCTTC AAGTACGACG ACGGCGTGGC CCAAGGCAGC CGTTGGGGCC TGCGCGGCAC GGAAGATCTG GGTGGCGGCC TGAAGGCACT GTTCGTTCTG GAAAGCGGCT TTAACAGCGG CAACGGCACG CTCGGCCAAG GCGGCGCACT GTTCGGCCGC CAGGCTTATG TCGGTCTGTC GAAGGACGGC ATCGGCTCGC TGACGTTCGG TCGCCAGTAC TCGTTTTCGA CGGACTACCT GGGCGGCAAC TACTCGACCG GCGGCCAGAC CGTCGCGGGT AACTACGCTT ACCACATCAA CGACGTCGAC CAGTTGACGT CGAGCCGTAT CAACAACGCA GTCAAGTTCA GCAGCGCGAA TTTCGCGGGC CTGACCTTCG GCGCGATGTA TGGCTTCTCG AACCAGGCTG GCGCATTCGC CGGCTCGCCG ACGGTCGGTA CGACCGCGGG TTCGTCGCGC GCTTATAGCT TCGGCGTGAA CTACGCAAAC GGCCCGTTCG GCGTCGGCGC GGCTTACACG GACATCCGCT TCCCGGCGCA ATCGACCCCG GCGTTCTCGA CGGCCATGGC CAACGTGACG ACGGGCACCG TGCGCGATCT GCGCACGTTC GGTGTCGGCG GCCGTTACAC GATCGCGGCA GCCACGCTGT GGGCGTTGTA CACGAACACG CGTTTCGAGC CGATTACGGG CGGCACGACG ACGTTCGCCG CCTATGAAGC GGGCGCGAAG TACGCGTTCA CGCCGGCGCT GACGGCGGGC GCGGGCTATA CGTACATGCA CCTGAGCAAC GCGAATCGCG GTCACTGGAA CCAGGCGGAC CTGAGCGTCG ATTACGCGCT GAGCAAGCGC ACGGACGTGT ATGCACTGGG TATCTACCAG ATCGCTTCGG GCCACAACGC GGCAACGGGC GACGTGCAGG CGCAGATCGG TTCGAGCACG AGCTACTTCA GCACGTCGGG CACGGGTTCG GACAACCAGC TGGCGTTCCG CGTCGGTATC CGTCACAAGT TCTAA
|
Protein sequence | MNNKVFAAAT LAVFATAAHA QSSVTLYGVI DAGISYVNNS KTATGHDNLF KYDDGVAQGS RWGLRGTEDL GGGLKALFVL ESGFNSGNGT LGQGGALFGR QAYVGLSKDG IGSLTFGRQY SFSTDYLGGN YSTGGQTVAG NYAYHINDVD QLTSSRINNA VKFSSANFAG LTFGAMYGFS NQAGAFAGSP TVGTTAGSSR AYSFGVNYAN GPFGVGAAYT DIRFPAQSTP AFSTAMANVT TGTVRDLRTF GVGGRYTIAA ATLWALYTNT RFEPITGGTT TFAAYEAGAK YAFTPALTAG AGYTYMHLSN ANRGHWNQAD LSVDYALSKR TDVYALGIYQ IASGHNAATG DVQAQIGSST SYFSTSGTGS DNQLAFRVGI RHKF
|
| |