Gene Bphyt_5955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5955 
Symbol 
ID6277450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2177395 
End bp2178549 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content64% 
IMG OID642617017 
Productporin Gram-negative type 
Protein accessionYP_001889660 
Protein GI187920628 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.144043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACAATA AAGTATTTGC CGCCGCTACT CTCGCCGTCT TCGCCACCGC CGCCCACGCG 
CAAAGCAGCG TCACGCTGTA TGGTGTGATC GACGCCGGTA TCAGCTACGT GAACAACTCG
AAGACCGCAA CGGGTCACGA CAACCTCTTC AAGTACGACG ACGGCGTGGC CCAAGGCAGC
CGTTGGGGCC TGCGCGGCAC GGAAGATCTG GGTGGCGGCC TGAAGGCACT GTTCGTTCTG
GAAAGCGGCT TTAACAGCGG CAACGGCACG CTCGGCCAAG GCGGCGCACT GTTCGGCCGC
CAGGCTTATG TCGGTCTGTC GAAGGACGGC ATCGGCTCGC TGACGTTCGG TCGCCAGTAC
TCGTTTTCGA CGGACTACCT GGGCGGCAAC TACTCGACCG GCGGCCAGAC CGTCGCGGGT
AACTACGCTT ACCACATCAA CGACGTCGAC CAGTTGACGT CGAGCCGTAT CAACAACGCA
GTCAAGTTCA GCAGCGCGAA TTTCGCGGGC CTGACCTTCG GCGCGATGTA TGGCTTCTCG
AACCAGGCTG GCGCATTCGC CGGCTCGCCG ACGGTCGGTA CGACCGCGGG TTCGTCGCGC
GCTTATAGCT TCGGCGTGAA CTACGCAAAC GGCCCGTTCG GCGTCGGCGC GGCTTACACG
GACATCCGCT TCCCGGCGCA ATCGACCCCG GCGTTCTCGA CGGCCATGGC CAACGTGACG
ACGGGCACCG TGCGCGATCT GCGCACGTTC GGTGTCGGCG GCCGTTACAC GATCGCGGCA
GCCACGCTGT GGGCGTTGTA CACGAACACG CGTTTCGAGC CGATTACGGG CGGCACGACG
ACGTTCGCCG CCTATGAAGC GGGCGCGAAG TACGCGTTCA CGCCGGCGCT GACGGCGGGC
GCGGGCTATA CGTACATGCA CCTGAGCAAC GCGAATCGCG GTCACTGGAA CCAGGCGGAC
CTGAGCGTCG ATTACGCGCT GAGCAAGCGC ACGGACGTGT ATGCACTGGG TATCTACCAG
ATCGCTTCGG GCCACAACGC GGCAACGGGC GACGTGCAGG CGCAGATCGG TTCGAGCACG
AGCTACTTCA GCACGTCGGG CACGGGTTCG GACAACCAGC TGGCGTTCCG CGTCGGTATC
CGTCACAAGT TCTAA
 
Protein sequence
MNNKVFAAAT LAVFATAAHA QSSVTLYGVI DAGISYVNNS KTATGHDNLF KYDDGVAQGS 
RWGLRGTEDL GGGLKALFVL ESGFNSGNGT LGQGGALFGR QAYVGLSKDG IGSLTFGRQY
SFSTDYLGGN YSTGGQTVAG NYAYHINDVD QLTSSRINNA VKFSSANFAG LTFGAMYGFS
NQAGAFAGSP TVGTTAGSSR AYSFGVNYAN GPFGVGAAYT DIRFPAQSTP AFSTAMANVT
TGTVRDLRTF GVGGRYTIAA ATLWALYTNT RFEPITGGTT TFAAYEAGAK YAFTPALTAG
AGYTYMHLSN ANRGHWNQAD LSVDYALSKR TDVYALGIYQ IASGHNAATG DVQAQIGSST
SYFSTSGTGS DNQLAFRVGI RHKF