| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5953 |
|---|
| Symbol | |
|---|
| ID | 6277940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2174824 |
|---|
| End bp | 2175606 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642617015 |
|---|
| Product | cationic amino acid ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_001889658 |
|---|
| Protein GI | 187920626 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.203121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAC TGCTAGCGGC TTTGACGGTT GCTCTGCTTG CAACCGTCTC GATTGGCGCA
CACGCTAAAG ATTGGTCGAC CGTCCGTTTC GGCGTTGACG CCAGCTATCC CCCGTTCGAG
TCGAAGGGCT CGGACGGCAA GCTCGTTGGC TTCGACATCG ACCTCGGCAA TGAAATCTGC
GCGCGCATGA AGGCCAAGTG CGTGTGGGTG GAAAACGACT TCGACGGCAT GATCCCGGCT
CTGAAGGCGA AGAAGTTCGA CGGCGTGCTG TCGTCGATGT CCATGACGCC GCAACGCGCC
GAGCAGATCG CCTTCTCGAA CAAGCTGTTC AACACGCCGA CGCGTCTCGT GGCGAAGAAG
GGTTCGGGCA TTCTGCCGAC GGCCGACTCG CTCAAGGGCA AGACGGTTGG CGTGGAACAA
GGCACGATCC AGGAAACCTA CGCGAAGACC TACTGGGAAC CGAAGGGCAC GAAGGTCGTG
CCGTATCAGA ACCAGGATCA GGTCTATGCC GACTTGCTGT CGGGCCGTCT GGACGCAGCG
CTGCAAGACG CGGTGCAAGC TGAAATCGGC TTCCTGAAGA CGCCGCGCGG CGCCGGCTTC
GACTTCGTCG GCAAGAACCT CGACGATCCG AAGATCCTCG GCAACGGCGC AGGCATCGGC
ATGCGCAAGG AAGACACGGA TCTGAAGGCG AAGGTCGACA AGGCAATCGC CGACATCATC
AAGGACGGCA CGTACAAGAA GCTCGAGAAG AAGTACTTCG ACTTCGACGT GTACGGCGGC
TAA
|
|---|
| Protein sequence | MKKLLAALTV ALLATVSIGA HAKDWSTVRF GVDASYPPFE SKGSDGKLVG FDIDLGNEIC
ARMKAKCVWV ENDFDGMIPA LKAKKFDGVL SSMSMTPQRA EQIAFSNKLF NTPTRLVAKK
GSGILPTADS LKGKTVGVEQ GTIQETYAKT YWEPKGTKVV PYQNQDQVYA DLLSGRLDAA
LQDAVQAEIG FLKTPRGAGF DFVGKNLDDP KILGNGAGIG MRKEDTDLKA KVDKAIADII
KDGTYKKLEK KYFDFDVYGG
|
|---|
| |