| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5950 |
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| Symbol | |
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| ID | 6279623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2170736 |
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| End bp | 2172550 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642617012 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001889655 |
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| Protein GI | 187920623 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.407449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACGGC CAGGGCTGAC CTTCAAACTA TCCGTGCTAC TTGCGTGCAT CGGCGTGCTG
GCGTCCGGCG CGACCGGCTA TTACGCGTAT CGCGCCAACC GCACGATGCT CGTGAACGAA
GCCGAGCGCA GTCTGCTCAT GTCGACGGAA CTGCTCGGCC AGCGCTTTTC CACCTCGATC
GACGATGTCG GCGCCGACGC GCTCGTGCTC GCGAGCATGC CGTCCACGGC GGAGGTCGCG
CAGACCGACG ACGGCGCCGG CCCGAACGCG GCACGCGAAC GGCTGGCGCA GGTGTATTCC
AGTTTCATGG TGCATCACCC GGAGTACCTG CAAGTGCGGC TGATTTCGCG TCAGCACTAT
GGACTCGAAC TGGTTCGCTT CGACCGCGAC GCCGACGGCC TCGTGCGCGT CGAAGGGGAC
AAGCTGCAGG AGAAAGGCCA GTTCGCGTAC GTGTTCGACA CGTTGACGTT TTCGCCCGGC
CGCATCTACA CCTCCCCGAT CACGGTCAAC CACGAATACG GCTCGCATGC CGCGCAAGGC
AAGCCGACCT TGCGGCTCGG CACGCCGGTG TCGAACGGCA ACGGCGCGGT GGTGGGCGTG
ATCGTGATCG ACATCGATCT GGCGGGTTTG TTCAGGCGCG TGCAAAGCGA TTTGCCGAGC
GACTATGAGG TCTATCTGGC CAACGAGTGG GGCGATTTCC TCGTCAATCC GGATGCGTCG
AAAACCTTCG GCTTCGATCG CGGCAGGCGC GTGCTGATGC AGGACAGTTT CTCCGTCACC
AAGCCGCTTT TCGAACAGAC GCAAAGCGAG GTGCTGGTCA ACGGCCTGGC GCGGCCGCAC
CAGGCCGCCG GCCAGGTACT CGCTTTCGTG CGCCGGCCGT TCGGCGATCT GGAAGGCAAC
CGCTTCATCG TGCTCGGTCT CGCCAAACCG CTCGACGACG TGTTGTCCGG CGCGAATCTG
CTGGGCGACC GAATCGTGCG CATGGTGCTG ATTTTCAGCG TGCTGGCGCT GTTCCTCGCG
GTTCTGTTCG CGCGCGCGCT GACCAAGCCG CTGCATAGTC TCGCGTATGC GGCGACGCAT
CTGTTCGCCG AGCACGCCAT GGAGACGCTG CCGCTCAAAC GCACCGACGA AATCGGCGTG
CTGGCGCGCT GCTTCGACCG GCTGCGCCGT GAAATCAAAG CGCAGATGGA CGCGCTGCAC
GCCAAACAAC GCGAGCTCGT GCATCTCGCC ACGCACGACG TGCTGACCGG ACTGCCGAAC
CGCGTACTGT TCATGGAGAA GCTCGAAAAT TCGATCGACG AAGCGACGCG GCGCGAGGAA
GGCCTGGCCG TACTGTTCGT CGACCTGGAT CGCTTCAAGC AGATCAACGA TCAGTTCGGC
CATGCCGTCG GCGACAAGGT GCTGGTCGCG GTGGCGCGCC GCCTGAAACA GGTGCTCTGT
TCCGCCGATG TGGTGGCGCG TCTGGGCGGC GACGAATTCA TCGTGTTGAT CGAGGGGCCG
CGCTCCGCGG AGGCAGCGCC CGCGATTGCC TCGCGCATCA TGGCGGCGTT GAACGAGGAA
CTCCAGGTGG ACGGACAAGG CATGACGGTG GGCGCGAGCA TCGGCATCAG CCAGTTCCCG
GACGACAGCG GCACCGCCGA GGAACTGCTG CTCAACGCGG ATGCCGCAAT GTATGCGGCC
AAATCCGGCG GACGCTGCGC CTATATGCGA TACCACGATG TGCTCGACAT GCGCCGCCGC
GAACAGTTCG AGCAGGCGCA TGCAGCGGCG GGCATCGGCG CGACAGAAGG ACACGAGGCC
GAGCCGACGG CGTGA
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| Protein sequence | MIRPGLTFKL SVLLACIGVL ASGATGYYAY RANRTMLVNE AERSLLMSTE LLGQRFSTSI
DDVGADALVL ASMPSTAEVA QTDDGAGPNA ARERLAQVYS SFMVHHPEYL QVRLISRQHY
GLELVRFDRD ADGLVRVEGD KLQEKGQFAY VFDTLTFSPG RIYTSPITVN HEYGSHAAQG
KPTLRLGTPV SNGNGAVVGV IVIDIDLAGL FRRVQSDLPS DYEVYLANEW GDFLVNPDAS
KTFGFDRGRR VLMQDSFSVT KPLFEQTQSE VLVNGLARPH QAAGQVLAFV RRPFGDLEGN
RFIVLGLAKP LDDVLSGANL LGDRIVRMVL IFSVLALFLA VLFARALTKP LHSLAYAATH
LFAEHAMETL PLKRTDEIGV LARCFDRLRR EIKAQMDALH AKQRELVHLA THDVLTGLPN
RVLFMEKLEN SIDEATRREE GLAVLFVDLD RFKQINDQFG HAVGDKVLVA VARRLKQVLC
SADVVARLGG DEFIVLIEGP RSAEAAPAIA SRIMAALNEE LQVDGQGMTV GASIGISQFP
DDSGTAEELL LNADAAMYAA KSGGRCAYMR YHDVLDMRRR EQFEQAHAAA GIGATEGHEA
EPTA
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