| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5852 |
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| Symbol | |
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| ID | 6277860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2066861 |
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| End bp | 2068432 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642616916 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001889559 |
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| Protein GI | 187920527 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.741914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCTG CCACGTCCCG CCATCTGCGT ATCGCCGGCG CGTCGATCGT CGTATCGATC
AGCGCGGCGC TCAGCGGTTG CGTGAGCGTC GGCCCGGATT TCAAACAGCC AGAAGCGACG
CTTGAAAACC AGTGGCTCGA AAGTCTGCCC CGCGCGGCGC AGGCGACGCC TGCCGCGCAA
GCGGCCTGGT GGACCGCATT CAACGATCCC GTGCTCACCG CGCTGGAGCA GCGCGCGTAT
GAGCGCAACC TGTCGCTGCA AGTGGCCGGC CTGCATATCT TCAAGGCGCG CGCGCAGCTC
GCCACCAGCG CCGAGAATCT GCTGCCGCAG TCGGGCAGCG TGTCGGTGGG CGCCGACCAT
ATCAACACGA GCGGCGTCGG GCCGATTCCG CCGGCGCATT TGTGGGCCGA GCATTTGCGC
GCGAACGTGG GCTGGGAGAT CGACTTCTGG GGCAAATACC GCCGGCAGAT CGAATCGGAC
CGCGCGCAAT TGCGCGTCTC GGAAGCCGCC TATGACAACT CGCTGGTGTC GCTGTTCGGC
GACGTCGCCA ATGCCTACAT CGATCTGCGT GCGCTCGAAC AACGCATCGT CGTCGCGCAG
CAGAATCTGA AGTCGGTCCA GCAGAGCCTC ACGCTGACCC AGGCGCGCTA CAAACACGGT
GCGTCGAGCC AGCTCGATGT CGAACAGGCC GCCACGCTGG TGGCGGAAAC CGAGGCGCAG
ATTCCGCCTC TCATCAAGGC GCGCGCGCAG GATCGCGACA CGCTCGCCGT GCTGCTCGCC
GATCCGCCCG ACGCCGTCGA CGCGCAGCTC AAAGGCAGCA GTGCGATTCC CGTGCCGCCC
ACGCAGATCG ATGTCGGCAT TCCCGCCGAT CTGCTGCGGC GCCGGCCCGA CGTGCGCCAG
GCCGCGCTCA ACGCGGCGGC GCAATCGGCG CTGATCGGCG CGGCCAAGGC GAAGCTGTAT
CCGTCCTTGT CGTTGACGGG CCTGTTTGGG CTGTCGTCGG GTGAACAGCA TGGCATTGGC
TTGACGCAAT GGGGCAGCAA GACCATTGGC CTGTTTTCCG CGGGCATCAC GCTGCCGATC
CTCGATCGCG GCCAACTGAA AAACGCCGTG CGGATTCAGG ATGCGACCTT TCAGGAGGCC
GTGCTCGATT ATCAGAACAC GGTGCTGCAG GCGCAAAAAG ATGTGGAAGA CGCGATTGCC
GGGCTGCGCA CCTCGCTCGA CGCGCTGGCT GCGTCGGCGC GCGCGTCGGA TGCCTCGCAG
CGCGCGCTGC GGCTCGCCAA CGCGCAGTAT CGCTCGGGCT CGGTTACTTA CGACACGGTA
CTCGACGCGT CGCGCTCCGC CTTGCGTGAC GGCGATTCGC TCGCGCAGAA CCAGGGGCTC
GCCGCGCTCG CTGCGGTAGC GTTGTATCGC GCGCTCGGCG GTGGCTGGGA AGTGGCGCAA
GGGCAGCAGG TGGTGAGCGA ACAGATTGCC GAACAGATGG CGCGGCGCAC GGATTGGGGA
CGCCTGTTGA ACCCGCCCGC GAACTCCGCA TTGGCGCGCG CGAGCGGAGG CGAGCCCGAG
AATGGGAAAT AA
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| Protein sequence | MKPATSRHLR IAGASIVVSI SAALSGCVSV GPDFKQPEAT LENQWLESLP RAAQATPAAQ
AAWWTAFNDP VLTALEQRAY ERNLSLQVAG LHIFKARAQL ATSAENLLPQ SGSVSVGADH
INTSGVGPIP PAHLWAEHLR ANVGWEIDFW GKYRRQIESD RAQLRVSEAA YDNSLVSLFG
DVANAYIDLR ALEQRIVVAQ QNLKSVQQSL TLTQARYKHG ASSQLDVEQA ATLVAETEAQ
IPPLIKARAQ DRDTLAVLLA DPPDAVDAQL KGSSAIPVPP TQIDVGIPAD LLRRRPDVRQ
AALNAAAQSA LIGAAKAKLY PSLSLTGLFG LSSGEQHGIG LTQWGSKTIG LFSAGITLPI
LDRGQLKNAV RIQDATFQEA VLDYQNTVLQ AQKDVEDAIA GLRTSLDALA ASARASDASQ
RALRLANAQY RSGSVTYDTV LDASRSALRD GDSLAQNQGL AALAAVALYR ALGGGWEVAQ
GQQVVSEQIA EQMARRTDWG RLLNPPANSA LARASGGEPE NGK
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