Gene Bphyt_5813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5813 
Symbol 
ID6278964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2015628 
End bp2016968 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content65% 
IMG OID642616877 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001889520 
Protein GI187920488 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.243583 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.354769 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGGCA CTTTCCGTTC GCTGCGCAAT TTCAATTACC GGGTCTGGGC GGGCGGCGCG 
ATCGTCTCCA ACATCGGCAC GTGGATGCAG CGCACGGCGC AGGACTGGCT CGTCCTCACG
GAACTCACGC GTCACAATGC GACCGCCGTG GGGATCGTCA TGTCGCTGCA GTTCGGCCCG
CAATTGCTGC TGTTGCCGCT CACCGGTTAT GCGGCCGATC ACTTCGACCG CCGCAAGCTG
CTGTTCGCCA CCCAGGCGGC CATGGGCACC TGCGCACTGG GCCTCGGCAT TCTCACCGTG
ACCGGGCTCG TGCAGTTGTG GCACGTCTAT GTGTTCGCGG GGCTGCTCGG CTGCGTCACC
GCGTTCGACT CGCCGGTGCG CCAGACCTTC GTGTCCGATC TGGTCGGCGA AGAAGATCTG
TCGAACGCCG TCGGCCTGAA TTCCACTTCG TTCAACATGG CGCGCATGGT CGGGCCCGCG
GTCGCCGGTT TGCTGATCGC ATCGGTCGGC ACCGGTTGGG TGTTTCTGAT CAATGCGCTG
TCTTTCGTCG CCGTGCTCGG GTCGCTGCGC ATGCTGCGGC TGAACGAACT GCATCTGAGG
CCGGCTGCGG CGCGCTCGCG CGGCAGTTTC GTGGAAGGCT TCAAATATGT CTGGAAGCGC
CCCGATCTGG TGACCGCGTT GTTGATGCTG TTCCTGATCG GCACGTTCGG CCTGAACTTC
CCGATCTTCA TTTCGACGAT GTCGGTCACG GAGTTTCATG CGGGCGCCAG CGAATACGGC
GTGCTGAGTT CGACCATGGC GATCGGCTCC GTGACCGGCG CGCTGCTCGC CGCGCGCCGT
GCGAAACCGC GCATGGTGCT GCTGCTCGGC GCAGCGGCCA TGTTCGGGGT GGGCTGTACG
CTGGCTTCGC TGATGCCGAG CACCCTGTTG TTCGGCCTGA TGCTCATCGC GATCGGCGTC
TCGACGCAGA CCTTCTCGAC CTCCACCAAC AGTCTCGTGC AAGTCACTAC CGAGCCTGCC
ATGCGCGGCC GGGTGATCGC GATTCTGCTG GCTATTTTGA TGGGCGGCAC GCCGCTCGGC
GCGCCGGTCG TCGGCTGGGT CGCGGACCGT TTCGGCCCAC GCTGGGCGCT CGGGGTCGGC
GCGGCTTCGG GATTCGCGGC GGCGCTCGTC GGCTTGCTTT ATTTCGTGAA GTACCGCCAA
TTGCGCGTGT ATATCGAAGC GGGGCGTCTG CGCTACAGCG TCGACGATCC GCGGCAGGCG
CCTGCTTATG TCAGCCCAGC CGCCGCAGTG CAAAACGCCG TGTTGAGCGA AGCGGAAGAA
GATTCGTCTG CGGGCGTTTA A
 
Protein sequence
MTGTFRSLRN FNYRVWAGGA IVSNIGTWMQ RTAQDWLVLT ELTRHNATAV GIVMSLQFGP 
QLLLLPLTGY AADHFDRRKL LFATQAAMGT CALGLGILTV TGLVQLWHVY VFAGLLGCVT
AFDSPVRQTF VSDLVGEEDL SNAVGLNSTS FNMARMVGPA VAGLLIASVG TGWVFLINAL
SFVAVLGSLR MLRLNELHLR PAAARSRGSF VEGFKYVWKR PDLVTALLML FLIGTFGLNF
PIFISTMSVT EFHAGASEYG VLSSTMAIGS VTGALLAARR AKPRMVLLLG AAAMFGVGCT
LASLMPSTLL FGLMLIAIGV STQTFSTSTN SLVQVTTEPA MRGRVIAILL AILMGGTPLG
APVVGWVADR FGPRWALGVG AASGFAAALV GLLYFVKYRQ LRVYIEAGRL RYSVDDPRQA
PAYVSPAAAV QNAVLSEAEE DSSAGV