Gene Bphyt_5689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5689 
Symbol 
ID6280055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1892939 
End bp1894117 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content61% 
IMG OID642616762 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_001889405 
Protein GI187920374 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.905556 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATGC CTACCATCCG GCACGTGCGT GCCTTCATCG TCCGCGGAGG CGGTGCGGAT 
TATCACGACC AACCCGGCGG ACACTGGATC GACGATCACA TCTCAACACC GATGGCGCGT
TATCCGGAGT ATCGCCAGAG CCGCCAGTCG TTCGGTATCA ATGTGCTGGG TACGCTGGTG
GTGGAGATCG AAGCGAGCGA CGGCACCGTC GGTTTTGCGG TAACGACGGG CGGCGAGATC
GGCGCGTTCA TCGTCGAGAA ACATCTCGCG CGGTTTCTCG AAGGCCAACT CGTGACCGAC
ATCGAGAAGA TGTGGGATCA GATGTATTTC TCGACTTTGT ACTACGGTCG CAAAGGCGTG
GTGCTGAATA CGATCTCGGG CGTCGATCTC GCGTTGTGGG ATCTGCTCGC GAAAGTGCGC
AAGGAGCCGG TGTACCAGCT ATTGGGAGGT CCGGTGCGCG ACGAACTCGT GTTCTATGCG
ACCGGTGCGC GGCCCGATCT GGCGAAGGAG ATGGGTTTCA TCGGCGGCAA GCTGCCGTTG
CAGCATGGTC CGGCCGAAGG CGAAGCAGGC CTCAAGCAGA ATCTGGAGAA ACTCGCGGAC
ATGCGCAGCC GCGTCGGCGA CGACTTCTGG CTGATGTACG ACTGCTGGAT GAGCCTCGAC
GTGCCGTACG CAACGCGGCT TGCGCAAGCC GCGCACGAAT ACGGCCTGAA ATGGATCGAA
GAATGCCTGC CGCCCGACGA CTACTGGGGT TACGCCGAAC TGCGCCGCAA CGTGCCACGC
GGCATGATGG TGTCGACCGG TGAACACGAA GCGACGCGCT GGGGCTTTCG CATGCTGCTC
GAAATGCAAT GCTGCGATCT GATTCAACCG GATGTCGGCT GGTGCGGCGG CATTACCGAA
TTGATCAAGA TCTCCGCGCT CGCCGATGCG CACAATGTGA TGGTGGTGCC GCACGGTTCA
TCGGTGTATA GCTATCACTT CGTGGTCACC CGGCACAACT CGCCGTTCGC CGAGTTTCTG
ATGATGGCGC CCAAGGCCGA CGAAGTCGTG CCGATGTTCA CACCGCTGCT GCTCGACGAA
CCAGTACCGG TGAATGGACG CATGAAGGTG CCGGACACGC CGGGTTTCGG CGTGAGGCTG
AATCCGGAAT GCGCGTTGGT GCGGCCTTAT CCACGGTGA
 
Protein sequence
MAMPTIRHVR AFIVRGGGAD YHDQPGGHWI DDHISTPMAR YPEYRQSRQS FGINVLGTLV 
VEIEASDGTV GFAVTTGGEI GAFIVEKHLA RFLEGQLVTD IEKMWDQMYF STLYYGRKGV
VLNTISGVDL ALWDLLAKVR KEPVYQLLGG PVRDELVFYA TGARPDLAKE MGFIGGKLPL
QHGPAEGEAG LKQNLEKLAD MRSRVGDDFW LMYDCWMSLD VPYATRLAQA AHEYGLKWIE
ECLPPDDYWG YAELRRNVPR GMMVSTGEHE ATRWGFRMLL EMQCCDLIQP DVGWCGGITE
LIKISALADA HNVMVVPHGS SVYSYHFVVT RHNSPFAEFL MMAPKADEVV PMFTPLLLDE
PVPVNGRMKV PDTPGFGVRL NPECALVRPY PR