| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5624 |
|---|
| Symbol | |
|---|
| ID | 6277846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1826779 |
|---|
| End bp | 1828098 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642616698 |
|---|
| Product | metabolite/H+ symporter, major facilitator superfamily (MFS) |
|---|
| Protein accession | YP_001889341 |
|---|
| Protein GI | 187920310 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.181082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCA CAGAACCGAT CGCCGCGACG TCAAGCGTTT CGCGCTCGAC GCGCGCGGCC
GCCGTGCTGC GCGTGACCAG CGGCAACTTC CTCGAACAGT TCGATTTCTT TCTGTTCGGC
TTTTACGCAA CCTTTATTTC GAAAATCTTC TTTCCTTCGA CCAGCGAATT CGCCTCGTTG
ATGCTCACCT TCGCCGTGTT CGGCGCGGGC TTTCTCATGC GTCCTCTCGG CGCGATCTTT
CTCGGCGCGT ATATCGACAA AGTGGGGCGG CGCATGGGGC TGATCGTCAC GCTGTCGATC
ATGGCGAGCG GCACCGTTCT GATCGCGTGC GTGCCGGGCT ATGCGAGCAT CGGCCTGCTT
GCGCCTGCGC TCGTATTGCT CGGCCGGCTG CTGCAGGGCT TCTCGGCGGG CGCGGAACTG
GGCGGCGTGT CGGTCTATCT CGCGGAGATG GCGACGCCCG GCAACAGGGG CTTTTACACG
AGCTGGCAGT CGGCGAGCCA GCAGGTTGCC ATCGTCATGG CAGCGGCCAT TGGCTATGGC
CTGAACGAGT GGCTTTCCGC GCAGCAGATC GGGGCGTGGG GCTGGCGCGT GCCGTTCCTC
ATTGGCTGCG CGATCGTGCC GTTCCTGTTC ATGCTGCGCC GTTCGCTGCA AGAAACGGCC
GCGTTCGAGG CGCGGCAGCA TCATCCGCAG GCGCGTGAAA TCTTTTCGAT GCTGCTTGCC
AACTGGCGCA TCGTCATCGG TGGCATGTTG CTGACGGCGA TGACCACTAC GACGTTCTAT
CTCATTACCG TCTATACGCC GACCTTCGGC AGGTCAGTGC TGAAGCTGTC CACGGCGGAT
AGCCTCATGG TGACGCTGCT CGTGGCCGTA TCGAACTTCG TCTGGCTGCC CATTGGCGGC
GCGGTGTCCG ACCGCATTGG CCGCAAGCCG CTGTTGCTCG CCGTTTCGGT GCTGGCGATC
TTCACCGCGT ATCCGGCGCT GTCGTGGCTC GCCGATGCAC CGAGCTTCGC ACGCATGTTG
ATCGTGCTGC TATGGTTCTC GTTCTTCTTC GGCATGTACA ACGGCGCAAT GGTCGCCGCG
CTGACCGAAG TGATGCCGGC CGAAGTGCGG GTCGCGGGTT TCTCGCTGGC ATTCAGTCTG
GCGACGGCAG TCTTCGGCGG ATTTACGCCG GCAGTGTCCA CGTATCTTAT TCAGGTAACG
CATGACAAGG CCGCGCCCGG TTACTGGCTG AGCTTCGCTG CGCTCTGCGG CTTGTGCGCG
ACGCTCGGGC TATACCGCCG CCGCGCGAGC AGCAGCGCGT CGGCGGCGTC GTCCGCCTGA
|
|---|
| Protein sequence | MNPTEPIAAT SSVSRSTRAA AVLRVTSGNF LEQFDFFLFG FYATFISKIF FPSTSEFASL
MLTFAVFGAG FLMRPLGAIF LGAYIDKVGR RMGLIVTLSI MASGTVLIAC VPGYASIGLL
APALVLLGRL LQGFSAGAEL GGVSVYLAEM ATPGNRGFYT SWQSASQQVA IVMAAAIGYG
LNEWLSAQQI GAWGWRVPFL IGCAIVPFLF MLRRSLQETA AFEARQHHPQ AREIFSMLLA
NWRIVIGGML LTAMTTTTFY LITVYTPTFG RSVLKLSTAD SLMVTLLVAV SNFVWLPIGG
AVSDRIGRKP LLLAVSVLAI FTAYPALSWL ADAPSFARML IVLLWFSFFF GMYNGAMVAA
LTEVMPAEVR VAGFSLAFSL ATAVFGGFTP AVSTYLIQVT HDKAAPGYWL SFAALCGLCA
TLGLYRRRAS SSASAASSA
|
|---|
| |