| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5615 |
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| Symbol | |
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| ID | 6279698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1818252 |
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| End bp | 1821431 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616692 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001889335 |
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| Protein GI | 187920304 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.635734 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA ATCTGCTCGT CCACCTGCTC GGACGTCTGC GCGTAGGCCG CAAGCTGCTG
CTGATCTATC TGCTCGACCT GAGCGCGGTG GTGTTCATTA GCGGCATTCT GATCCACGAA
AAGTACATCG CGATCGACTT CTCCGACAAG GAGTTGGTCG GCAACGCGTA TATCGCGGCC
GCGCAAGACG CGCTGACCGG TTTCGCACTC GCCGGGGCCG GGCGCCAGCA AAGCGCGGCG
CAATTGCAGC AGACCGCCGG CAAGCTCGCC GACGCAGAGC GCAGGTTCGG GGAGCACATG
CAAAGTGCGG CACTCAATCA ACGGGTACGC GACGCGCTCC TCGCCAGCGC GTCGCCGCAT
GCGGATGCCG CGACGCTCGA CGGTGGACTC GAAGCGACCC GTGCACTGGT GACACGGGTC
GGTAACCAGT CGAACCTGAT TCTGGACCCC GACCTCGACA GCTACTATGC AATGTCTCTG
TCGATTCTGC GCTATCCGGA ACTGCTCAGC GACGTCGACC GGATAGGCCG TCATCTCCAC
GACGCCGGTG CGAAATCGCG CACTGTGCCG ATGGGCCGCG ACGAGATGCG CACCCGCTAC
CTGGTACTCG AAGGGCAACT CGATGCGGTT TTACAGGGTC TGCGTTCGGA CTACGCGGAG
GCCTCGGCCG CGAACGGCAC GCTGACCCGC ACGATCGGTC CGTCTATAGA ACGACTGCTC
GCCGCCATCG ATTCATATCG GCGCGTGGCC GGCGCAGCGG TCGACGCCGG TGGCGACGTG
CCCGAACTCG CGACGCTCGA TGCCGCCCAA CAGCGCGTGG TGATAAGCGT CAGCGACGCA
TGGAGCATCA CCAGCAGTCA GCTCGAACGG CTGCTGCATG AGCGCGTGCG CGGCCTTTTT
GAACGCATGT GGCTGCACCT TGGCACTGCC CTGTTCTTGC TGTGCGCGAT CCTGAGCATG
GTATATGCGG TCGCCCAGCA AATCTCCCGA CCGCTGCGCG AGCTCGCGCG CGTGATGGAT
ACCGTGCGCC GGACCGGCGA CCACTCATTG CGTGCAGACT GGCACAGTCA GGATGAGATT
GGCCGACTCG TGCGCGGCTT TAACGACATG CTCGCGCAGC TCGGCCGCGA ACGCGACATA
CAGAAGGAGC TCGCGGCAAC GGCTCGCGCG TCCGCCGCCC AATACGCGCT GGTGGAGGCG
ACGCCCGTGC CGATGGTGGT CACGGCGATC CCGGGCCATG AGGTGTTGCA TGCGAACCGC
CCGGCACTTG CGTGGCTCAA CGGCTGCACG GTCGACCCGT GGGGCTACGG GCTCGACTCC
GAGGTCCGGG CGCGCTTTTT CCAGCAACTG TCGGACCGCG ATGCCGTCGA CGAATTCGAG
GTGCGCTGGA AAGCCAGCAA CGAACCCAGC TGGGCGATGC TGTCGGCGCG AAGACTCGCC
TTTCAGGGAC GTGATGCGGT ATTGACCGCA TTCACACCGA TCAACCAGAT CAAGTCGATG
GAGCAGCGCC TCGAATTGTG GGGCAAGGTG TTCGAGGCAT CGTCGGAAGC CATTCTGATT
CTCGACGCAC AGCGACGCCT CGTGACCGCG AACGCGTCGT TCTATCGGGC CACCGGCTAT
CGCGCCGACG ATGTCGCAGG TAAGGAGCCC GCCTTCCTTA GCGGCGCGCA CGTGCAGGGC
GACCTGCTCG CGGCCGTGAT CGATTCGGTG GATCGTCAGA GCGCGTGGCA TGGCGAAGCA
AACGTGCGGC GGCGCGCGGG GAGCGATTAC CCGGCGTGGC TGATGATTAG CGCCGTGCGC
GACCGGCGCG CGAGCCTTTC GCACTACATC TGCACGTTGA TCGACATCAC CGATCGAAAG
AAGAGCGAAG CTCGCATTCA GTTCCTCGCC GAACATGACC TCCTGACCGA ATTACCGAAC
CGCGCGCTGT TCATGAAGCG CCTGCGTGCG GTACTCGATC ACGCCCGCGT CGCGGATCAC
CGCGTCGCCG TGCTGTTCAT CGATCTGGAC CGTTTCAAGC ACGTCAACGA TTCGCTGGGT
CATCACATTG GCGACAGCCT GTTGCGCTCG GTGTCGAGGC GTCTCGTTCG GGCCGTGCGC
GCCGACGATA CCGTGAGCCG CCTCAGCGGC GACGAGTTCA CGATCATCCT CAACGGCGTC
AGCGGCGCGG CCGAGGTCGG CCGCACCATC GAGGACCGTC TGCTGCCGCT GATGCGTCAA
CCGCATGAAC TCGATGGCAT GGCGCTGCCG GTGTCGTGCA GTGTCGGCGT CGCGCTGTTC
CCCGACGATG GCGAGGACAT CGAGACGCTG ATGCAGAATG CCGATGCCGC CATGTATCAG
GCCAAAGGCG CTGGCCGCAA CCTCGTCAAG TTCTTCACCC CTGACATGGC CGAACGCGCG
CTTCACCGGG CGCAGCTTGA GGCGTCTTTG CGCAACGCGA TTGCGATGGA CGAGTTCCGG
CTGGAGTATC AGCCGTGCAT CGACGCCCGC ACCGGCGAAC TGGTCGCCGT GGAAGGGCTG
CTGCGCTGGC ACAACCCGCG GCTCGGCAAG GTGTCGCCCG CGGAATTTAT TCCGATCGCG
GAAGAAAGCC GGCTGATCAT CTCGATGGGC GCGTGGGTGA TAGAACAAGC GTGCCGCCAG
ATTGCGGAGT GGAACGACGA AGGCCTCGCC CCGCTACGCG TGTCGATCAA CGTGTCCGCG
ATCCAGTTGC GCGACCCGAA CCTGATCGGC ATGCTCGCAA CCAGTCTCGA GCGCAATCGC
GTCGCCCCCG AACGGCTCGA ACTCGAGATC ACCGAGACGG TGCTGATGGA TAGCGCGGAG
CATTATGAAT CGACGGTGGC CGGCATCCGC AAGCTTGGCA TCAAGCTATC GCTCGACGAT
TTCGGCGTCG GTTACTCGAG CCTCAGCTAT CTGAACCGGT TTCCGCTGGA TCGCCTCAAG
ATCGACCGGG CGTTCGTGAA AGACATGCTC GACGCGCCGG CCGATCTCGC GATCATTCGC
GCGATCATCG AACTCGGGCA CGAACTCGGG TTACGAGTGG TCGCGGAGGG GGTTGAGAGC
GAGCATCAGG CGCAGATCCT GCGCAACATC GGTTGCGACG AGTTACAGGG TTTCCTGTTC
TCCCCGTCGC TGTCGCCTGC CGATCTGGGT TCGTGGAGCA GCATGCGCAT GGTAGCGTGA
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| Protein sequence | MKRNLLVHLL GRLRVGRKLL LIYLLDLSAV VFISGILIHE KYIAIDFSDK ELVGNAYIAA
AQDALTGFAL AGAGRQQSAA QLQQTAGKLA DAERRFGEHM QSAALNQRVR DALLASASPH
ADAATLDGGL EATRALVTRV GNQSNLILDP DLDSYYAMSL SILRYPELLS DVDRIGRHLH
DAGAKSRTVP MGRDEMRTRY LVLEGQLDAV LQGLRSDYAE ASAANGTLTR TIGPSIERLL
AAIDSYRRVA GAAVDAGGDV PELATLDAAQ QRVVISVSDA WSITSSQLER LLHERVRGLF
ERMWLHLGTA LFLLCAILSM VYAVAQQISR PLRELARVMD TVRRTGDHSL RADWHSQDEI
GRLVRGFNDM LAQLGRERDI QKELAATARA SAAQYALVEA TPVPMVVTAI PGHEVLHANR
PALAWLNGCT VDPWGYGLDS EVRARFFQQL SDRDAVDEFE VRWKASNEPS WAMLSARRLA
FQGRDAVLTA FTPINQIKSM EQRLELWGKV FEASSEAILI LDAQRRLVTA NASFYRATGY
RADDVAGKEP AFLSGAHVQG DLLAAVIDSV DRQSAWHGEA NVRRRAGSDY PAWLMISAVR
DRRASLSHYI CTLIDITDRK KSEARIQFLA EHDLLTELPN RALFMKRLRA VLDHARVADH
RVAVLFIDLD RFKHVNDSLG HHIGDSLLRS VSRRLVRAVR ADDTVSRLSG DEFTIILNGV
SGAAEVGRTI EDRLLPLMRQ PHELDGMALP VSCSVGVALF PDDGEDIETL MQNADAAMYQ
AKGAGRNLVK FFTPDMAERA LHRAQLEASL RNAIAMDEFR LEYQPCIDAR TGELVAVEGL
LRWHNPRLGK VSPAEFIPIA EESRLIISMG AWVIEQACRQ IAEWNDEGLA PLRVSINVSA
IQLRDPNLIG MLATSLERNR VAPERLELEI TETVLMDSAE HYESTVAGIR KLGIKLSLDD
FGVGYSSLSY LNRFPLDRLK IDRAFVKDML DAPADLAIIR AIIELGHELG LRVVAEGVES
EHQAQILRNI GCDELQGFLF SPSLSPADLG SWSSMRMVA
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