| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5548 |
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| Symbol | |
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| ID | 6280522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1755154 |
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| End bp | 1755750 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642616629 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_001889272 |
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| Protein GI | 187920241 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0778424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.596503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCGCTA TGCTGGTGGT TCTGAACACT GCGGCGTTTC TGATCGAGCA GCTCGATCCT
GACCGGCTGA TCGGATTATT TGCGCTCTGG CCGGCAACCA GCAGCAGCGG CGTCCCAGCC
TTTCACATAT GGCAACTATT GACGTATAGC TTTCTACACG CAAATTTCAT GCATCTGGCC
GTTAACATGT TCGGCTTGTA TATGTTCGGA CGCGACGTGG AAAGCACGAT CGGCCGTGCG
CATCTTGTTT TGCTGTACTT CACAAGCGTG CTCAGCGGCG CTCTGCTGCA GTTGGCGGTC
GGATTGGCCG ATGTGACGGT GCGTGCGCCG GCCATTGGAG CTTCGGCAGG CGTATTCGGC
CTGCTGGTCG GTTACGCGCT GCTATTCCCG CGCCGCCGCG TAATCCTTCT CTTCCCGCCA
GTGCCGATGC CCGCGTGGCT CTTCGCCACG TGCTATGGCG TCCTGGAACT CGTACTCGGC
GTTGCAGGCG CGCAAAGCGG TATCGCCCAT TTCGCGCATG TGGGCGGAAT GCTTGGCGCC
GCAGTCCTGC TCCTGCACTG GATGCGTGCG CCGTCGCGCG AGCGGCGGCT TGAGTGA
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| Protein sequence | MIAMLVVLNT AAFLIEQLDP DRLIGLFALW PATSSSGVPA FHIWQLLTYS FLHANFMHLA
VNMFGLYMFG RDVESTIGRA HLVLLYFTSV LSGALLQLAV GLADVTVRAP AIGASAGVFG
LLVGYALLFP RRRVILLFPP VPMPAWLFAT CYGVLELVLG VAGAQSGIAH FAHVGGMLGA
AVLLLHWMRA PSRERRLE
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