Gene Bphyt_5502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5502 
Symbol 
ID6277949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1705835 
End bp1707001 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content63% 
IMG OID642616585 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001889228 
Protein GI187920197 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0812471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0619637 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACTC AGGCATCCGT TACGACCGGC GGCACCGGTC CCGTCAAACT AACCAGCGCT 
CTGATCGCGC TTTTCGCATT CTGCTGCGGC GCGATCGTCG CCAACCTTTA CTACGCGCAG
CCGATCACCG AGCTGATTGC GCCGGACATC CACATGTCCT CGGGCACGGC CAGCCTGATC
GTGTCGCTCA CGCAGATCGG CTACGCATTC GGGCTGTTCT TTCTCGTGCC GCTTGGCGAT
CTGCTTGAAA ATCGCAAGCT GATGATCACC ACCGCGCTCG TCTCGATCGT GAGTCTGGCT
GCCGCGGCAT TCGCTCATCA GCCGGGCTGG TTCCTCGCAA TCTCGCTGAT GGTCGGCTTC
AGCTCCGTTG CCGTGCAGAT CCTCATTCCG CTCGCCGCGC ATCTCGCGCC GGACGAGTCG
CGCGGCAAGG TGGTGGGCAC CATCATGAGC GGCCTGCTGC TCGGCATTCT GCTGTCACGC
CCGATCTCCA GCATCGTGGC CGGCCATTTC GGCTGGCGCG CAGTCTTTGG CGGAGCCGCC
GTATTGATGG CCATCGTGAC CAGTGTCCTC GCGCTGACCA TCCCGCGCCG CCAGCCGGAG
CATAAGGCGA CCTACTTCGA ATTAATCGGC TCGCTGGGCC ATCTGTTGCG GACAATGCCG
GTGCTGCGCC ATCGCTCGCG ATATCAGGGA TTGATGTTTG CCTCGTTCAG CCTCTTCTGG
ACGGCTATTC CTATCGAACT GACAAGACAG TTCGGGTTGT CCCAAACGGA GATCGGGATC
TTCGCGCTGG TCGGCGCGAT CGGCGCGACC TCCGCACCGG TGGCGGGCCG CCTGGCCGAT
GCAGGACACA CGGTACGCGC CACGCTGATC GCACTCGTGG TGGGCGCGCT GGCCTATACG
CCTGCCCTGA TCCATCCGGC CTGGGGTGTA TTCGGACTCG TCGCAACCGG CATCGTGCTC
GACTTCGCCG TGCAGATGAA CATGGTGCTG GGTCAACGCG AAATTTACGC GTTGCACGCG
GCGAGCAGAA ACCGTCTGAA CGCGCTGTAT ATGACGAGCA TATTCGTGGG CGGCGCTTCG
GTTCAGCGCT CGCGAGTCCG CTTTATCAGC ATGGCGGCTG GCCGCTCGTT GCAGGCGTCG
CCACGGCTTT CCCGATCGCC GCTTTGA
 
Protein sequence
MSTQASVTTG GTGPVKLTSA LIALFAFCCG AIVANLYYAQ PITELIAPDI HMSSGTASLI 
VSLTQIGYAF GLFFLVPLGD LLENRKLMIT TALVSIVSLA AAAFAHQPGW FLAISLMVGF
SSVAVQILIP LAAHLAPDES RGKVVGTIMS GLLLGILLSR PISSIVAGHF GWRAVFGGAA
VLMAIVTSVL ALTIPRRQPE HKATYFELIG SLGHLLRTMP VLRHRSRYQG LMFASFSLFW
TAIPIELTRQ FGLSQTEIGI FALVGAIGAT SAPVAGRLAD AGHTVRATLI ALVVGALAYT
PALIHPAWGV FGLVATGIVL DFAVQMNMVL GQREIYALHA ASRNRLNALY MTSIFVGGAS
VQRSRVRFIS MAAGRSLQAS PRLSRSPL