Gene Bphyt_5471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5471 
Symbol 
ID6280372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1676326 
End bp1677888 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content62% 
IMG OID642616556 
ProductABC transporter related 
Protein accessionYP_001889199 
Protein GI187920168 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.428158 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGACGA GATTGACGAA TGCCACGCAG CGCGGGCCCG GTCCCGCGGC TGAGCCTGAG 
CCGCCTGTAT CCCGCGAGAT CTTGCAACTG AAAGGTGTGA GCAAGCGCTT TCCAGGGGTC
GTCGCCCTCG ATGGCATCGA CCTCGATCTG TGCGCCGGCG AAGTCCATGC CGTGTGCGGC
GAAAACGGCG CGGGCAAGTC GACATTGATG AAAATCATTA GCGGCCAGTA TCGCGCGGAT
GAAGGCGTGG TCCGCTACCG CGGTGCGCCC GTGCAGTTCT CTTCCACCTC CGACGCGCAG
GCGGCAGGCA TTGCGATCAT TCACCAGGAA CTGAACCTCG TCCCGCACCT CTCGGTCGCG
GAAAACATCT ACCTTGCGCG CGAACCCAAA CGCGGCCCGT TCGTGGATTA CCGCACGCTG
AATAGCAATG CGCAGCGGTG TCTGCAACGC ATCGGGCTGA ACGTGTCGCC GAGCACGCTC
GTCGGCGCGC TTTCGCTTGC GCAACAGCAG ATGGTGGAGA TTGCGAAGGC ACTGTCGCTA
GATGCGCGCG TGCTCATCAT GGACGAACCC ACCTCCTCGC TGACCGAATC GGAAACGGTC
CAACTGTTCC GCATCATCAG GGAACTGCGC GCTGGCGGGG TGGCGATTCT TTACATCTCG
CATCGGCTCG ATGAGATGGC TGAGATCGTG GACCGCGTTA CGGTGCTGCG CGACGGCCGT
CACATTGCAA CGAGCGATTT CGCCTCGACC ACGGTCAACG AAATCGTGGC CCGAATGGTC
GGTCGCCCGC TCGACGATGC CTATCCGCCA CGCCAGTCCA CTCCCTCTAA TCAGATCCTG
CTGCGCGTGC GCGACCTGCA AAGGACAGGC GTTTTCGGCC CGCTTTCGTT CGAACTGCGC
AAGGGCGAGA TTCTAGGCTT CGCGGGTCTG ATGGGCGCGG GGCGGACCGA AACCGCCCGC
GCGATCTTCG GCGCCGAGCG GCCCGATTCC GGTTCGATCA CGCTCGGCGA CGAGCCTGTC
ACGATCGGTT CACCGCGCGA GGCCATTCGA CACGGGATCG CATACCTGTC CGAAGACCGC
AAGAAAGACG GCCTCGCCCT CTCGATGCCG GTTTCCGCAA ACATCACGCT GGCCAACGTC
CGGGCCATTT CGTCGCGCGG CTTTCTGCGT TTCTCCGAAG AAACGGCCAT CGCCGAGCGC
TACGTTCGCG AACTCGGCAT CCGTACACCG ACGGTCAAGC AGATCGCGAG AAATCTGTCC
GGTGGCAATC AACAGAAGAT CGTCATCAGC AAATGGCTGT ACCGCGGCTC GCGCATTCTG
TTTTTCGACG AGCCCACCCG CGGTATCGAC GTCGGCGCGA AATACGCGAT TTACGGCCTG
ATGGACAGAC TCGCGGCGGA CGGCGTCGGT GTCGTCCTGA TCAGTTCGGA GCTGCCCGAA
CTGCTTGGCA TGACTGATCG TATCGCCGTG TTTCATGAAG GGCGTATCAC CGCGGTCCTT
GAGACCAGAC AGACCAGTCA GGAGGAGATC TTGCACCATG CATCAGGGAG AAGTCATGCT
TGA
 
Protein sequence
METRLTNATQ RGPGPAAEPE PPVSREILQL KGVSKRFPGV VALDGIDLDL CAGEVHAVCG 
ENGAGKSTLM KIISGQYRAD EGVVRYRGAP VQFSSTSDAQ AAGIAIIHQE LNLVPHLSVA
ENIYLAREPK RGPFVDYRTL NSNAQRCLQR IGLNVSPSTL VGALSLAQQQ MVEIAKALSL
DARVLIMDEP TSSLTESETV QLFRIIRELR AGGVAILYIS HRLDEMAEIV DRVTVLRDGR
HIATSDFAST TVNEIVARMV GRPLDDAYPP RQSTPSNQIL LRVRDLQRTG VFGPLSFELR
KGEILGFAGL MGAGRTETAR AIFGAERPDS GSITLGDEPV TIGSPREAIR HGIAYLSEDR
KKDGLALSMP VSANITLANV RAISSRGFLR FSEETAIAER YVRELGIRTP TVKQIARNLS
GGNQQKIVIS KWLYRGSRIL FFDEPTRGID VGAKYAIYGL MDRLAADGVG VVLISSELPE
LLGMTDRIAV FHEGRITAVL ETRQTSQEEI LHHASGRSHA