| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5454 |
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| Symbol | |
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| ID | 6279410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1655961 |
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| End bp | 1658030 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642616539 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_001889182 |
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| Protein GI | 187920151 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAGA CTGTTTGCCG ACTCCGCCTG CAAGGCGGCC ACCGGCACAC ACCGCCCGGG
GACCTCATGA ACGACGACCA ACACGAGCAG GTGCTATTTG CCCAGTTCGG CACAAGCAGT
CCATGCTGGC GTCTGTCGAA CGACAGCAAC GCGCTCGAAC TCACGCCCGT CACTGGCGAC
GTGCCGGCTA ATGTCGCCAT TCCGCTGAAT CCTCAGCAGG CTTCGCAAAT CCGCTGCCTC
ACTGGCGTGA CCTCGCACCT CGTGCTCGAC GTGCGGCTGT TCGGCGAACC GTTGCGTTTG
CATCTGGTCG GTAAGAAGCT CAGCAGCAAC AGCTGGGCCG GCACCGCATC GGCCTACGAC
GACACCGAAT CCGTCGCCCG CGATCTGGTC CACGGCCTCT CGTTTGCCGA ACAAGTGGTG
TCCGAAGTGA ATTCGGTCGT CGTGATCGTC GACCGGCATG GTCGAATACA GCGCTTCAAC
CGTCTTGCCG AGGAACTCAC GGGCGTCAAG GAAGAGAACA TCGTCGGCCG CAACGTCTGG
GCGTTGTTCA TGTCCACCGA AGACGGCGCA GCCTCCAGCC AGAACATTGC GGGCTTCTTC
AATCGCGGCG TGTCGTACGA AGTCGAGCGG CGCGTCAAGA CAGTGCATGG CGAGCGGCTC
TTTTTGTTCC GCAATAAGTT CGTGCAGAGC GGCAGCGGCA TCGACGAACA ATTCCTGATC
TGCTCCGGCA CCGACATCAC CGAGGAACGG CTCGCGCAGG AACGCCTCAC CCAACTGGCG
AACACCGACT CGCTCACCGG CCTCGCGAAT CGCAACGCGA TCCAGGACAA GATCCGCGCC
GCCATCGAAG ACGCCGCGCC GGGCGAAGCC GTCGGCGTGC TGTTCCTCGA CCTCGACAAC
TTCAAGAAGG TCAACGACCA CTACGGCCAT GTCTTCGGCG ACCGCCTGAT CCGCGATGTC
TCGTCGGCGA TCAGCGAGTG TCTGAATGAA GGCGATACGC TCGCGCGGCT CGGTGGCGAC
GAATTCATCG TGCTCGCCGC CAAGGGCACG GCGCACGAAC TCGAAACCAC CGCGCAGCGC
ATTCTCGAAC GCATGCGCAC GCCGTTCGCC CTCGGGCTCG TGGAGGTCTA CACCGGCTGC
TCGATCGGCA TCGCGCGGTA TCCGGAACAC GGCGACAGTC TCGAATCGCT GATCCGTTCG
GCCGACACGG CCATGTACGT CGCCAAAGAC GAAGGCAAGC GCACGCACCG CGTGTTCTCG
CCGGAAATGA ACCGTCGCGT CGCCGAGTAC ATGTGGCTCG ACACCAACTT GCGGCGCGGG
CTCGAAGAAG GCCAGCTGAC GCTGCACTAC CAGCCGAAAC TGTCGCTCGC CACCGGCGTG
GTGCAAGGCG TCGAAGCGCT GGTGCGCTGG AATTCGCCGG AGCGCGGGCA GATCATGCCG
AGCGAGTTCA TCCGTTACGC GGAAGAGTCC GGGCTGATCG GCGTGCTGGG CCGCTGGGTC
ATGGAAACGG CCGCGAAACA GGCCGCCAAA TGGAAGGCGG ACGGCTACAA CCTGCGCATC
GCGATCAACG TGTCGGCGCG GCAACTGGTC GATACGGCGG TCGTCCGCCA TTTCAGCGAG
GCGCTGCAGA ACGCCAGGCT CGACCCCTGC CTGATCGATC TCGAACTGAC CGAGAGTTGC
CTGATCGAAG ACGAAACGGC GGCGATCGAT CTGATCAGGC AGTTCCGCCA GCTCGGCGCG
CAGGTTCATC TGGACGATTT CGGCACGGGG TATTCGTCGC TCTCGCAGCT CGGCCGGATT
CCGCTCGACG TCATCAAGCT CGACCGCAGC TTCGTGCGCT CGATCAACGC CGACACCAAA
GCGCAGGCAC TGGTGCGCTC CATGGTGGCC GTCGCGCAGG AATTGAATTT CAAGGTGGTC
GCCGAAGGGA TCGAGACCGA GTCGGAAGAA GTGTTCATGA AGGGCCTGGG AGTGGATTAC
GTGCAGGGCT TCCTGTACGG TCAGGCCATG CCGGCGGCTG AATTTGAACG CTGGCTGCAG
GATAGACAGA AGCTCAGGCT GATTGCCTGA
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| Protein sequence | MMKTVCRLRL QGGHRHTPPG DLMNDDQHEQ VLFAQFGTSS PCWRLSNDSN ALELTPVTGD
VPANVAIPLN PQQASQIRCL TGVTSHLVLD VRLFGEPLRL HLVGKKLSSN SWAGTASAYD
DTESVARDLV HGLSFAEQVV SEVNSVVVIV DRHGRIQRFN RLAEELTGVK EENIVGRNVW
ALFMSTEDGA ASSQNIAGFF NRGVSYEVER RVKTVHGERL FLFRNKFVQS GSGIDEQFLI
CSGTDITEER LAQERLTQLA NTDSLTGLAN RNAIQDKIRA AIEDAAPGEA VGVLFLDLDN
FKKVNDHYGH VFGDRLIRDV SSAISECLNE GDTLARLGGD EFIVLAAKGT AHELETTAQR
ILERMRTPFA LGLVEVYTGC SIGIARYPEH GDSLESLIRS ADTAMYVAKD EGKRTHRVFS
PEMNRRVAEY MWLDTNLRRG LEEGQLTLHY QPKLSLATGV VQGVEALVRW NSPERGQIMP
SEFIRYAEES GLIGVLGRWV METAAKQAAK WKADGYNLRI AINVSARQLV DTAVVRHFSE
ALQNARLDPC LIDLELTESC LIEDETAAID LIRQFRQLGA QVHLDDFGTG YSSLSQLGRI
PLDVIKLDRS FVRSINADTK AQALVRSMVA VAQELNFKVV AEGIETESEE VFMKGLGVDY
VQGFLYGQAM PAAEFERWLQ DRQKLRLIA
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