Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5307 |
Symbol | |
ID | 6278994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1488601 |
End bp | 1489686 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642616393 |
Product | porin Gram-negative type |
Protein accession | YP_001889036 |
Protein GI | 187920005 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGCCC TCGCCGTGGC AAGTCCGCTG GCCTATGGTC AAACCAGCGT GAGCTTATAT GGCCGTCTCG ACGCGGGCCT CGAATACCTG AATCACATCA ATAATGGCGC GGGCGGCAGT TCGAGCCGCT GGAGCGCGGA AGGCGGCGAC TGGGGCACCA GCATGCTCGG CCTCAAAGGC AACGAAGATC TGGGCGGCGG CCTCAATGCG ATCTTCAACC TCGAAACCGG CTTGCAGGTC ATGAACGGTA CGACGAGCGG CGGGCGGCTC TGGTCGCGGC GCGCGTTCGC CGGTTTGAAG AGTGAGCAGT GGGGCACGTT GCAGGCCGGC CGCAATCTGT TTATCGACAG CGACGGCGTA TGGGAATTCG ATCCGTTCGT GCAGCAGGCG TTTTCGTCGG CCTCGCTCGT GCGTGGGCGC AACTGGCAGC AAACCAGCAA CAACGTCGAG TATCACAGCC CGGTGTTTTG GGGATTCGAC GTGCAGGCGC AATATGCGTT CGGCAATCAG GCGGGCGCTT TCAACAGCGG TGCGGCCGGC GAGTTCGGCC GCTCGGACGG CATCATGCTG ACCTATCACT CGCCGCTCTT CGACGTGCGC GGCATCTACG ACGAACTGCG CGACAGCAAC GGCCGCTTCA GCAACATCTT CCAGGCATCG CGCGAATATT TCGCCGGCGT GAACGTGCAT TTCGACTCGG TGAAGATACA GGGCGCCTAC ACGCATTACT CGGCGCCTGA CTCCCCGGTC GGCGTCGCCG ACTCGGCCGA TCACTACTGG CTCGGCGCCA CCTATAACTT CCTGCCGCGC TGGGCCATGA CGGCGGGCGG CTTCTACGTG AAGGTCGGCG ACGGCTCGGG CGATGCCGCG CACGACCCCT CCGGCCACGC GATGATGTAC GTGCTCGGCA CCACCTACAA CCTGTCGAAG CGCACCTTCC TGTACGGCAC GGTGGGCTAT GTGCGCAATG GCAGCAACTC GAATTTCTCG CTGGAAGCAT CGCCGCGCGA TGCGACCAGC AAAACGAGTC CGCTGGTGGG CGAATCGCAG ACCGGCGCGT ATGTCGGGAT GCTGCATCAG TTCTGA
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Protein sequence | MAALAVASPL AYGQTSVSLY GRLDAGLEYL NHINNGAGGS SSRWSAEGGD WGTSMLGLKG NEDLGGGLNA IFNLETGLQV MNGTTSGGRL WSRRAFAGLK SEQWGTLQAG RNLFIDSDGV WEFDPFVQQA FSSASLVRGR NWQQTSNNVE YHSPVFWGFD VQAQYAFGNQ AGAFNSGAAG EFGRSDGIML TYHSPLFDVR GIYDELRDSN GRFSNIFQAS REYFAGVNVH FDSVKIQGAY THYSAPDSPV GVADSADHYW LGATYNFLPR WAMTAGGFYV KVGDGSGDAA HDPSGHAMMY VLGTTYNLSK RTFLYGTVGY VRNGSNSNFS LEASPRDATS KTSPLVGESQ TGAYVGMLHQ F
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