| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5238 |
|---|
| Symbol | |
|---|
| ID | 6278490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1415115 |
|---|
| End bp | 1415810 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616324 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001888967 |
|---|
| Protein GI | 187919936 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.51684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGA CTAACACGCT GACCATCGAC GCCCAACCCG GCCCATTCAG CTTCGACTCC
GCGAAAACGG CGCTGGTCGT GATCGACATG CAGCGCGATT TCATCGAGCC GGGCGGCTTC
GGCGAATCGC TCGGCAACGA CGTCTCGCTG CTCGCGGACA TCGTGCCGAC AGTAGCCGCG
TTGCTCGCCT TCGCGCGCAA GCACCACTGG TTCGTCGTGC ATACGCGTGA ATCGCACGCT
CCAGATCTGT CCGACTGTCC GCCGGCCAAA CGTCTGCGCG GCGCGCCGAA TGCGCGCATC
GGCGACGCCG GGCCGATGGG CCGCATTCTG ATTCGCGGCG AGCCCGGCAA TGCGATCGTC
GAACCGCTCG CGCCGCTTGC CGGCGAACTG GTGATCGACA AACCCGGCAA GGGTGCGTTC
CATGCGACCC GCCTCGGCGA AGAACTCGCG ATGCGCGGCG TCACGCATCT GGTGTTCGCC
GGCGTGACCA CCGAAGTGTG CGTGCAAACA TCGATGCGCG AAGCCAACGA CCGCGGCTAC
GACAGCCTGC TGATCGAGGA CGCCACCGCG AGCTATTTCC CCGCGTTCAA ACAGGCGACG
CTCGAGATGG TGCGCTCGCA GGGCGGCATT GTCGGCTGGA CCGCGCCGTT TGCTTCATTG
ATCAAAACCG ACGAGACGAC CCAGGCATGG AAATAA
|
|---|
| Protein sequence | MTSTNTLTID AQPGPFSFDS AKTALVVIDM QRDFIEPGGF GESLGNDVSL LADIVPTVAA
LLAFARKHHW FVVHTRESHA PDLSDCPPAK RLRGAPNARI GDAGPMGRIL IRGEPGNAIV
EPLAPLAGEL VIDKPGKGAF HATRLGEELA MRGVTHLVFA GVTTEVCVQT SMREANDRGY
DSLLIEDATA SYFPAFKQAT LEMVRSQGGI VGWTAPFASL IKTDETTQAW K
|
|---|
| |