| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5108 |
|---|
| Symbol | |
|---|
| ID | 6279340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1275903 |
|---|
| End bp | 1277048 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642616198 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001888841 |
|---|
| Protein GI | 187919810 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.671033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT CCAACCGCTC GTTCCTCACC GAGCAACAGA CGTTGATTCG CGACACCGCG
CGCCGAGTGG CGAACGAAAT CATCGCACCC ACCGCCGCCG AACGCGATCT CCAGTCCGCC
TGGCCGCGCA GCGAATTGAA GGCGCTCGCC GAACTCGGTT TTCTCGGCAT GCTGATCCCC
GAGCAATACG GAGGATCCGG TGCGGGCATC CTCGACTTCT GCATCGCGCA GCACGAGTTC
GCGGCGGTCG ATGCCGGACT CGCCACCATC ATGCACGTGC ACAATTTCAC TGCGCTCACG
ATCGTCGAGC ACGGCACCGA AACGCAAAAG CAGCGTTACC TGCCCGCCAT GGCATGCGGC
GAGTCGATCG GTGCGTTCTT GCTGACCGAA CCGCACGCGG GCTCCGACAC CGCCTCGCTG
CGCGCGAGTG CCCGCCGCGA GGGTGATCAC TACGTGCTCA ACGGCACCAA GCAGTTCATT
TCGAATGGCA GCGAGGCCGG CGTCGGGATT GCGTTCGCCA TTACTGACAA GGCTGCGGGC
AAACGCGGCG CGAGCACCTT CATCATCGAC CCGAACGCGC CGGGCTACAG CGTCACTCGT
ATCGAAAGCA AGCTCGGTCA GCACACCGCG CACACGGCAC AGATCGCGCT CGAAGGCTAC
CGGGTGCCGG CGGAAAACCT GCTTGGCCTG GAGGGCGACG GTTATCGCAC CGTGATGGCG
GGTGTCTCGG ACGGCCGCAT CGGCATCGCG TTCATCTCGG CGGGCGTAGC GCGGGGAGCG
CTGGACGCCG CCGTCAAATA CGCGCGCGAA CGCGAGGCGT ACGGCGGCCC GCTCACCAAA
CTTCAAGCCG TCGCTTTCGA TCTCGCGGAT ATGGCCGCGC AGGTCGACGT TGCATGGCAA
TACTGCCTTC ACGCCGCACG ACTGCGCGAT GCCGGTTTCG ACTGTATCAA GGAGGCGTCC
ATTGCCAAAT TGTTCGCGAG CGAGATTGCG GAGAAGGTAT GCTCCGACGC CTTGCAGATT
CATGGCGGGT ATGGCTACCT GACTGATTTC CCGGTCGAAC GATATCTGCG CGACGTGCGC
ATCTGCAAGA TCTACGAAGG AACGAGCCAC ATCCAGAAGC TGATCATTTC GCGCAACCTG
GATTGA
|
|---|
| Protein sequence | MTDSNRSFLT EQQTLIRDTA RRVANEIIAP TAAERDLQSA WPRSELKALA ELGFLGMLIP
EQYGGSGAGI LDFCIAQHEF AAVDAGLATI MHVHNFTALT IVEHGTETQK QRYLPAMACG
ESIGAFLLTE PHAGSDTASL RASARREGDH YVLNGTKQFI SNGSEAGVGI AFAITDKAAG
KRGASTFIID PNAPGYSVTR IESKLGQHTA HTAQIALEGY RVPAENLLGL EGDGYRTVMA
GVSDGRIGIA FISAGVARGA LDAAVKYARE REAYGGPLTK LQAVAFDLAD MAAQVDVAWQ
YCLHAARLRD AGFDCIKEAS IAKLFASEIA EKVCSDALQI HGGYGYLTDF PVERYLRDVR
ICKIYEGTSH IQKLIISRNL D
|
|---|
| |