Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5032 |
Symbol | |
ID | 6277943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 1183621 |
End bp | 1185426 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642616123 |
Product | acyl-CoA dehydrogenase domain protein |
Protein accession | YP_001888766 |
Protein GI | 187919735 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.690717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGATG CGCAGATCAT CAACTCACGT GATCTCGAGT TTCAGTTGTT CGAAGTACTC GAAGTAGAGA CGCTCACACG CCGCGCGCGT CACGCCGATC ACAGCCGCGA GACCTTCGAC GCTGCGCTCG ACACCGCGCA TACAGTCGCC GTGGAAAAGT TCGCGACACA CAACCGTCTC GCGGACGAAC ACGAGCCGCA GTTCGACGGA CAACGCGTCA CCCTGCCCGC CGAAGTGAAA GACGCGCTCG ACGCCATGCG CGCCAGCGGC TTCCTCGCCG CGGGCAAGGA TTACGAATGG GGCGGCATGC AGTTGCCGTC GGTGATTTCG TTTGCGTGCC TGTCGCTCTT CAAGAGCGCG AACATCGCGA CCGCGTCGTA TGCCATGCTG ACCACGGCGA ACGCGAACGT GATCGAGCGC TTCGGCAGCG AAACGCAAAA GCGCAAGTAT CTGCAAGCGC TCTTCGAAGG GCGCGCGTTC GGCACCATGG CGTTGACGGA GCCGCAAGCG GGTTCGAGCC TGTCCGATCT CGTCACGAGC GCCACGCCCA ATGCGGACGG CACTTATTCG ATTCGCGGCA ACAAGATTTT CATTTCAGGC GGCGACCACG AGTTGAGCGA GAACATCGTG CATCTGGTGC TGGCGCGCAT TCCCGGCGGG CCGCCGGGCG TCAAGGGCAT ATCGCTCTTC ACCGTGCCGA AGTTCCATGT CAACGAAGAC GGCAGCCTCG GCGCGCGCAA CGACGTCGCC CTTGCGGGAC TGATTCACAA GATGGGCTGG CGCGGCACGA CGTCGACCAT GCTGTCGTTC GGCGAACATG GCGAATGCAT CGGCGAGCTG GTGGGCGAGC CGCATCACGG TCTCGCGTAT ATGTTCCATA TGATGAACGA GGCGCGCATC GGCGTAGGTC TCGGCGCGGT CATGCTGGGC TACCGCGGCT ATCTCGCGTC GCTTGATTAC GCGCGCGAAC GGCCGCAAGG GCGCCGCCCC GACAACAAGA ATCCGCTCGA CCCGCAATTG CCGCTGATCG AACATGCCGA CGTGCGCCGC ATGCTGCTCG CACAAAAAGC CTACGTGGAA GGCGCTTATG CGTTGTGCCT GTACGCGGCG CGTCTCGTCG ACGAACAGAA CACCGGCGAG AGCGAAACCG TGCGCGCCGA AGCGGGCCTG CTGCTCGATC TGCTCACGCC GGTGGTGAAA TCCTGGCCGT CCCAATGGTG TCTCGAAGCA AACAGTCTCG CGATCCAGAT TCACGGCGGC TACGGCTACA CGCGTGAATA TCCAGTCGAG CAGTTCTATC GCGACAATCG GCTCAACATG ATTCACGAAG GCACGCACGG CATTCAGGCC ATCGATCTGC TCGGCCGCAA GGTGACGATG AAACAGGGCG CGGCGCTCAA ACAACTGGCC CGCGAAATCC AGCAGACAAT CGGTACAGCG CGCGAGCACC CGGCACTGCA CGCACATGCC GATGCGCTCG GCGCAGCATG GACCGATCTG ACTGCCACTG TCGAGGCGCT GCTGCCCACG CTGACCCATG AAAGCGAACG CGCGCTCGCC AACGCGAATG CGTTTCTCGA AGCCTTCGGT CATATCGTGA TTGCGTGGAC ATGGCTGCGT CAGGCGATCG TGGCAAACGC CGCGTTGTCT GCTTCGCATA GCGAAGCAGA CGCGGACTTC TATCGTGGCA AGCTGCATGC GTGTCAGTGG TTCTTCCGCT GGGAACTGCC GCGCGTCGCG TTGATGCTCG CCACGTTGCG CACCCTGGAC GACACCACGC TCGCCATGGC GCCGCAATGG TTCTAG
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Protein sequence | MQDAQIINSR DLEFQLFEVL EVETLTRRAR HADHSRETFD AALDTAHTVA VEKFATHNRL ADEHEPQFDG QRVTLPAEVK DALDAMRASG FLAAGKDYEW GGMQLPSVIS FACLSLFKSA NIATASYAML TTANANVIER FGSETQKRKY LQALFEGRAF GTMALTEPQA GSSLSDLVTS ATPNADGTYS IRGNKIFISG GDHELSENIV HLVLARIPGG PPGVKGISLF TVPKFHVNED GSLGARNDVA LAGLIHKMGW RGTTSTMLSF GEHGECIGEL VGEPHHGLAY MFHMMNEARI GVGLGAVMLG YRGYLASLDY ARERPQGRRP DNKNPLDPQL PLIEHADVRR MLLAQKAYVE GAYALCLYAA RLVDEQNTGE SETVRAEAGL LLDLLTPVVK SWPSQWCLEA NSLAIQIHGG YGYTREYPVE QFYRDNRLNM IHEGTHGIQA IDLLGRKVTM KQGAALKQLA REIQQTIGTA REHPALHAHA DALGAAWTDL TATVEALLPT LTHESERALA NANAFLEAFG HIVIAWTWLR QAIVANAALS ASHSEADADF YRGKLHACQW FFRWELPRVA LMLATLRTLD DTTLAMAPQW F
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