| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4992 |
|---|
| Symbol | |
|---|
| ID | 6279911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 1131090 |
|---|
| End bp | 1132544 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642616078 |
|---|
| Product | putative peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001888726 |
|---|
| Protein GI | 187919695 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4254] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.911035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0172735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTTT CCGTCGCTGG GGCAGCGCGT GGTTGCCTGA TCTCGCCGGC CCGCCGCAGC
GGCGTATGGA TCGCGGCCGC CGGCCTGCTC GTGATGACCT GTTTCGCGCC GGTGTCGGCG
TCCGCGCAAG CGTCGCGCGC GCCGAAGCCG CGTGCGAAAG CCGCCGCGCC GGCCTATGTC
TCGTATCTGA CCCACGAAGG CGATACGCTT TACGAGATCG CCGGCCGCTA TATGCGCGAC
CCGAGCGATT GGGCCGTGCT GAGCCGCCTG AATCATGTGC CCGCGCCGCG CCGCTTGCCG
GCCGGCATCG CACTGCTTCT GCCCGCCGAC AAGCTCAAGC AGGAACAGGA ATCCGCTCGC
GTGATCGCGA CCAGCGGACC GGCCGAGCAC GCCTTCGGCA AGAACCCTTA CGTGCCGCTT
GCCGAAGGCG CGACGCTCGG CGAAGGCGAC CGGGTGCGCA CTGGCGACAA CGGTTTTGTC
ACGCTGGAAT TGCCGGACGG CTCGCATGTC ACGATTGGAC AGAACGGCTT GCTGGATATC
GGCACGCTGA GGCGCACCAC GCTGACCGGC GCCGGCGATC GCCTGCTCGA ACTGCGCAAC
GGCGAAGTCG AAAGCCAGGT CACGCACGCG ACCAAAAAGG ACGACCGCTT TCAGATCCGC
TCGCCATCCG TCGTGGCGGG CGTGCGCGGC ACGCGCTTCA AGGTCGCCTA CGACGGCGGC
GCGCAAACCA CCGCGGTGGA AGTGCTGGAC GGCGCGGTCG GCGTCGACCC TGCCGCACTC
GGCGGCCGCG CTTTCACGCC GCCGCCCGGC GCGCCGCTGC AGGCCTCCTC GCAACTCGTG
AAGGCGCGCT TCGGCAGTGT GACGCGGGCG GGCGGCGCGA TCGGCGATCC GGTCGAATTG
CTGCCCGCGC CGGCGCTCAC GCAGCCGGCC AGGGTGCAGG ACGGCAAAAC GGTGGCGTTC
GACCTCGTGC CGGCCGACCG CGCGGTGGCC TACCGCATGC AGATCGCGCG CGACGCCGAC
CAGCTCGACC TGATTCGCGA CCAGCGCGTG AGCGAACCGC ACGCGGATTT CGGCGACCTG
GCCGACGGCA CCTATTTCGT ACGCGTCGCC GCGATCGACG CTCACGGCCT CGAAGGCTTG
CCGCAGGTGT ACGCGTTCGA ACGCCGCCAG CTCGGTTTGG CCGCCTCGGC GAAGCAGCGA
GCCGGCAGCC GCGACTATGA ATTCCGCTGG TTCGTCAGCC GTGGCACGGT CGAGACGCGC
TTCCGTTTCG TGCTGGCGAG CACGGCCGAT CTGCGCCATC CGCTCGTGGA CCGCACCGAT
CTGTCGGGCG GTCAACTGAT CGTGAGCGAC CTGCCGGCCG GCGTCTATTA CTGGACGATC
GTCGCCGAGC AGTTCGAGAA CGGCCGCTTC TATGAAAAGA GCAGCGCGGT GCGCTCGTTT
ACGCTTGCGC GCTGA
|
|---|
| Protein sequence | MTLSVAGAAR GCLISPARRS GVWIAAAGLL VMTCFAPVSA SAQASRAPKP RAKAAAPAYV
SYLTHEGDTL YEIAGRYMRD PSDWAVLSRL NHVPAPRRLP AGIALLLPAD KLKQEQESAR
VIATSGPAEH AFGKNPYVPL AEGATLGEGD RVRTGDNGFV TLELPDGSHV TIGQNGLLDI
GTLRRTTLTG AGDRLLELRN GEVESQVTHA TKKDDRFQIR SPSVVAGVRG TRFKVAYDGG
AQTTAVEVLD GAVGVDPAAL GGRAFTPPPG APLQASSQLV KARFGSVTRA GGAIGDPVEL
LPAPALTQPA RVQDGKTVAF DLVPADRAVA YRMQIARDAD QLDLIRDQRV SEPHADFGDL
ADGTYFVRVA AIDAHGLEGL PQVYAFERRQ LGLAASAKQR AGSRDYEFRW FVSRGTVETR
FRFVLASTAD LRHPLVDRTD LSGGQLIVSD LPAGVYYWTI VAEQFENGRF YEKSSAVRSF
TLAR
|
|---|
| |