| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4967 |
|---|
| Symbol | |
|---|
| ID | 6279988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1104375 |
|---|
| End bp | 1105334 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642616053 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001888701 |
|---|
| Protein GI | 187919670 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.128667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.152984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA TGCTCGCGCG CTTCTCGCGA CGTGTTGCTT CGTCCGGGCC GGCGTCCGAT
GCGGCGTCGG GTGCGTCCGG TCTCGGACCG GACACGCCTG CCGCCACCGC GATGGCAAAG
GCGCGGCCAT GGCTGCTGCT CGCGCCGATC CTGCTGTTTC TCGCCATCCT CGGCGCGGCG
GCGCTGGTCG TGTTGCGCAT GAGCTTCGGC ACGCAGGGCA ACGAGTGGCA CGGCTTCACG
CTGCAAAACT ACGCGGACCT GCTCGACGGC TACTTCATGA AGTCGTTGTG GCTCACCTTG
AAGCTCGCGT TCCAAAGCAT GATCTGCGCT GTGCTGCTGG CGATTCCGGT CGCACTGGCC
ATGGCGCGCA CGAAGTCGCG GCTCGCGCGG CGGCTCCTGC TGGCCGGCGT GCTGCTGCCG
CTGCTCGTCA ATCTGCTGCT GCAAGGCTAC GGCTGGCTGA TCATTCTCGG ACCGGCCGGT
CTGCTCAATC ACGCGCTGCT CGGCAGCGGC CTCGTGCAAC GTCCGTTGAT GTGGCTGTAC
CGCGAAAACG GCGTGCTGCT CGGGCTGATC CAGACGGCGT TTCCGCTTGC CGTGCTGCCG
CTTTCGAGCG CGATGCGCGC GGTCTCGAGT TCCTACGAAG AAGCCGCCGC CACGCTCGGC
GCGACACGCT GGCAAACGCT GCGTCACGTG CTGTTGCCTT TGGCGATGCC CGGCCTCGTA
TCCGGCGCGC TGCTCGTGTT CGCGTACAAC GCGAGCGCGT TCGCCGTGCC GCTGCTGCTC
GGCGGACGCC GCGTGCCGAT GCTCGCCGTG CTGGTCCACG ATCAGGTTGC GCCGTTGCTG
AACTGGCCGG CGGCTTCCGC GTCGGGTGTC GTTTTGATGA TCGCCACGTT GACGGTGATG
GCGCTGTCGC AGCGTCTCGT GCGCCGCACG CAAAAACTTG CCGAGGAGCC GCACGCATGA
|
|---|
| Protein sequence | MTTMLARFSR RVASSGPASD AASGASGLGP DTPAATAMAK ARPWLLLAPI LLFLAILGAA
ALVVLRMSFG TQGNEWHGFT LQNYADLLDG YFMKSLWLTL KLAFQSMICA VLLAIPVALA
MARTKSRLAR RLLLAGVLLP LLVNLLLQGY GWLIILGPAG LLNHALLGSG LVQRPLMWLY
RENGVLLGLI QTAFPLAVLP LSSAMRAVSS SYEEAAATLG ATRWQTLRHV LLPLAMPGLV
SGALLVFAYN ASAFAVPLLL GGRRVPMLAV LVHDQVAPLL NWPAASASGV VLMIATLTVM
ALSQRLVRRT QKLAEEPHA
|
|---|
| |