Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4948 |
Symbol | |
ID | 6277932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1082890 |
End bp | 1084050 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642616034 |
Product | porin Gram-negative type |
Protein accession | YP_001888682 |
Protein GI | 187919651 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0530377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.0846854 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGC AAGTGTTCGC GCTAGCTGTC TCCACCGCCT TGTCCGCCGC TTTTGCCGCG CCCGCCTCGG CGCAGACGAG CGTCACGCTG TATGGCGTAC TCGACGAAGG CATCAACTAC ACCAACAATG TCGGCCGCGG CCATGTCTAT GAACTGGCGA GCGGCTATGC GCAAGGCAGC CGCTGGGGGC TGAAAGGCGC CGAGGAACTG GGCGGCGGCT TGAAGGCGAT CTTCCAGCTG GAAAACGGTT TTGACGTGAG TTCCGGGCGG CTCAATCAGG GCGGCCGCAT GTTCGGCCGT CAGGCCTTCG TCGGCTTGAG CGCGAATCAG TTCGGCACCT TGACGTTCGG CCGCCAGTAC GATTCGGTGG TCGACTATCT AGCGCAGACC ACGGCCAACG GCAACTGGGC CGGCTCGCTC TTCTCGCATC CGTACGACAA CGACAATACC GACAACTCGT TCAGGCTCGA CAACTCGGTC AAGTACACGA GTCCGTCGCT GTCCGGCTTC CAGTTCGGCG GTGTGTATAG CTTCAGCAAC GACACCAACT TCGCCAACAA TCGCGCGTAC AGTTTCGGCG GCCAGTATTC CTATGGCGGA CTGCTGGTGG CCGCGGCGTA TCTGCAGGCC GACAATCCCG GCAATGGCGC GAACGGTGCG ATCACGGCGA ACGACGCGAG CTTCATCGCC GCCCGCATGC GCGTGTTCGG CGGCGGCATC ACGTACACGT TCGGTCCGGC GACGGCCGGC TTCGTCTATA CCAATTCGAA TTATCTGGAT CCGACCGGCA ACGGCTATCT CGGCGTGACG CCGCTCGTGC CGCCGGGCGT CTTGCTGAAC TCGCTGAAGT ATCAGAACTT CGAGGTGAAC GGCAAGTATC AGATTTCGCC GATGCTATTC GTCGGCGCGC AATACGTGTA CACGATGGAA ACCTACGACG CCTCGAGCGG CGGCGTGAAG CCGAAAATTC ACTCGTTCGG CCTGATGGCG GATTACAACC TGTCCAAACG CACCGACGTC TACATTCAGG GCGAGTATCA GCAGGTGACC GGCGACTCGA CCTATTCGAT TCTGGACGAT GCCTTCAACG TCGGCACGCA GTCGCCGTCA TCGACCTCGA AGCAGGTCGT GGTGCGCGCG GCGATCCGGC ATAAGTTTTG A
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Protein sequence | MNKQVFALAV STALSAAFAA PASAQTSVTL YGVLDEGINY TNNVGRGHVY ELASGYAQGS RWGLKGAEEL GGGLKAIFQL ENGFDVSSGR LNQGGRMFGR QAFVGLSANQ FGTLTFGRQY DSVVDYLAQT TANGNWAGSL FSHPYDNDNT DNSFRLDNSV KYTSPSLSGF QFGGVYSFSN DTNFANNRAY SFGGQYSYGG LLVAAAYLQA DNPGNGANGA ITANDASFIA ARMRVFGGGI TYTFGPATAG FVYTNSNYLD PTGNGYLGVT PLVPPGVLLN SLKYQNFEVN GKYQISPMLF VGAQYVYTME TYDASSGGVK PKIHSFGLMA DYNLSKRTDV YIQGEYQQVT GDSTYSILDD AFNVGTQSPS STSKQVVVRA AIRHKF
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