| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4917 |
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| Symbol | |
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| ID | 6278320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1041478 |
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| End bp | 1043316 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642616003 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_001888651 |
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| Protein GI | 187919620 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.263892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00583234 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAGAAT TGCTGCCGTA TTACGAGCGC GAGTTATCAT TTCTGCGGCG CTATTCGCGC
GACTTCGCCG AGCGCTATCC GAAGATCGCG GCGCGTCTGG CCATGTCCGG CGAGCATTGC
GAAGACCCGC ACGTCGAGCG GATGATCGAA TCGTTCGCGC TGCTCGGCGC GCGCATCAAC
AAGAAACTCG ACGACGATTA CCCCGAGTTT ACCGAAGCGC TGCTGGAAGT GCTTTACCCG
CACTACCTGC GGCCGTTCCC GTCGTGCTCG ATCGCGCAGT TGGGCACCTC CGCCGCGCTG
AGTCATCTGA CCGAACCGGT TCTTGTCGAA CGCGGCACTG AACTCAAATC GCGGCCCATT
CGCGGCGTGC AATGCCGTTT CCGTACCGCT TACGATGTGA CGTTGGCGCC GATCCGCATT
TCCGAGGCGA AGTACACATC CGTGGCGATG GCGCCGAGTG CGACCGTATT GCCCGGCAAT
GCCACGGCAA TCATATCGAT CACCTTCGAA TCGACGGCGG CGCAACTCGA TCTATCGGCG
CTGAAAGTCG GCAAACTGCG CACACACTTG CACGGCGAGC AGTCGTTTAT CGCGGCGTTG
GCGGACTGTC TGTTCGTCAA CGGCATGGCC ACTTACGTGG AAGCCGACCG TCGCGGCGTG
TGGAAACAAC TGCGCGAATC TCCGGTCGTG CAAGCCGGTT TCGACGAAGA CGACGCGCTG
ATCGACTATC CGGCCAAATC GCATCCGGCA TACCGGTTGC TGACCGAATA CTTCGCGTTC
CCCGAAAAAT TCAACTTCGC CGACTTCGAT CTGGCGGCGA TGACTCGCGA GAGCGGCCGC
TGCCAGCGAT TGACGCTGCA TGTCGTGCTC AAGGAAGTGC GCAGCGATTC GCACATGGCG
CGTCTGCTGG ATTCATTGGC CGCGCATCAT TTCCGCCTGT TTTGCACGCC GGTGGTGAAT
CTGTTCGAGC AGCACGGTGA GCCGATCCGT ATCAGCCATC AGGCAATTTC ATATCCGGTG
ATCGCCGAAG CGCGCCGCGC GTTTGCCTAC GAGGTCTATT CGATCGATTC GGTGAAACTC
GTCAGGCAGC AGGCGCATGA AGAATCGGTG ATCGAGTTCC GGCCGTTCTA TTCATTGCAT
CATGGCGAAG CAGCGCGCGC GGGACATTAC TGGTTTGCGC GGCGCAACGA CTGGGTTGCA
CAGAAAAGCC CCGGCTACGA GACTGAAATC TCTATCGTCG ATATCGACTT CGAACCGGCC
GCGCCGCAAA CGGATACCTT GAGTCTCGAT CTCACCTGCA CCAATCGCGA TTTGCCGGCC
GGTCTGGCGG TAGGGCTCGA AGGGGGCGAT CTGTTTCTCG AAGGCGGCTC GCTGACCGGC
AGCATCTCGA TGCTGCGCCG GCCCACCCCG AGCGTGCGTT TCGAGCGCGG TCGCGCCGCG
CATTGGCGAT TGATTTCCCA TCTGGCGTTG AATCATGTGT CGCTTGCCAA TAGCGGCCTG
TCGGCGCTCA AGGAAATGCT CGTGCTCTAC GACTTGCGGC GAACGGCGGT GTCCGCGCGG
CATATCGACG GACTGGTCGG CATCGAACAG CATGCCGCCG TGCAATGGCT GCCGGGTAAA
CCGTTCGCCA CTTTCGTGCG CGGTATCGAG ATTCGTTTGA CGATCGACGA AGAACATTTC
GTCGGCACGA GTCTCGCGTC GTTCGTGCGC GTGATCGATA CGTTTTTTGG GCTGTACGTG
CATTTGAACA GCTTTGTGCA ACTGGTCGTC GTGTCGAAGC GCACTGGCGA GGAGATCCTG
CGATGCAAAC CGCGCAGCGG CGAATCGATC CTGGCGTAG
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| Protein sequence | MEELLPYYER ELSFLRRYSR DFAERYPKIA ARLAMSGEHC EDPHVERMIE SFALLGARIN
KKLDDDYPEF TEALLEVLYP HYLRPFPSCS IAQLGTSAAL SHLTEPVLVE RGTELKSRPI
RGVQCRFRTA YDVTLAPIRI SEAKYTSVAM APSATVLPGN ATAIISITFE STAAQLDLSA
LKVGKLRTHL HGEQSFIAAL ADCLFVNGMA TYVEADRRGV WKQLRESPVV QAGFDEDDAL
IDYPAKSHPA YRLLTEYFAF PEKFNFADFD LAAMTRESGR CQRLTLHVVL KEVRSDSHMA
RLLDSLAAHH FRLFCTPVVN LFEQHGEPIR ISHQAISYPV IAEARRAFAY EVYSIDSVKL
VRQQAHEESV IEFRPFYSLH HGEAARAGHY WFARRNDWVA QKSPGYETEI SIVDIDFEPA
APQTDTLSLD LTCTNRDLPA GLAVGLEGGD LFLEGGSLTG SISMLRRPTP SVRFERGRAA
HWRLISHLAL NHVSLANSGL SALKEMLVLY DLRRTAVSAR HIDGLVGIEQ HAAVQWLPGK
PFATFVRGIE IRLTIDEEHF VGTSLASFVR VIDTFFGLYV HLNSFVQLVV VSKRTGEEIL
RCKPRSGESI LA
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