Gene Bphyt_4878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4878 
Symbol 
ID6278029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp1001721 
End bp1002629 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content64% 
IMG OID642615965 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001888613 
Protein GI187919582 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00176242 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.778008 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACT TTACCGATAA AGTCGCCGCA ATCACCGGCG CAGGCTCGGG CATGGGCCGC 
TCGCTCGCGA TTCAGTTGGC GCGCGAAGGC TGCCACCTCG CGCTCGCCGA CCGCAATGCC
GTGAGCCTCG CCGAAACCGC ACAGCTTGCG CAAGCCGCGG CGCCGCAGAT CGTCGGCTCG
CCGTTACACA TCACCACACG CGTGCTCGAT GTTGCAGACC GCGCCGCGAT GTTCGACTGG
GCCGCCGAAA CCGCCGCGCA GCATCAGAGC GTCAATCTCG TGTTCAACAA CGCGGGCGTC
GCGCTATCGA GCACCATCGA AGGGATGGAT TACGCGGATC TGGAGTGGAT CGTCGGCATC
AACTTCTGGG GCGTGGTGCA CGGCACGAAA GCGTTTCTGC CGTACATCAA GGCCTCCGGC
GACGGCCATA TCGTCAACAC GTCGAGCGTG TTCGGGTTGT TTTCGCAGCC GGGCATGAGC
GGGTACAACG CGACCAAATT CGCCGTGCGC GGCTTTACCG AAGCGCTGCG CCAGGAACTC
GACCTGATGA AGTGCGGCGT CTCGGCGACC TGCGTGCATC CGGGCGGCAT CCGCACGAGC
ATCGCGCAAT CGAGCCGTAT CGCGACGAAC ATGGTCGGTT TCATGCTGGA AACCGAACAG
CAAGGCAAGG ACGACTTCGA GAAGTTTTTC ATCACCACCG CCGACGAAGC CGCGCGCGTC
ATTCTCGACG GCGTGCGCAG GAACAAGCGG CGCGTACTGA TCGGACGCGA CGCGCGGGCC
GCCGACTGGC TGGCGCGCAC ACTGCCGGCC GCCTATCAGG CACTGGTGGT GATGCAAACG
CGCCGCATGA AACGCGTCGC CGAAAAACGC GCGCGGCGCG CCGCGCAGAT AGACGGCAAG
CGCGCCTGA
 
Protein sequence
MKNFTDKVAA ITGAGSGMGR SLAIQLAREG CHLALADRNA VSLAETAQLA QAAAPQIVGS 
PLHITTRVLD VADRAAMFDW AAETAAQHQS VNLVFNNAGV ALSSTIEGMD YADLEWIVGI
NFWGVVHGTK AFLPYIKASG DGHIVNTSSV FGLFSQPGMS GYNATKFAVR GFTEALRQEL
DLMKCGVSAT CVHPGGIRTS IAQSSRIATN MVGFMLETEQ QGKDDFEKFF ITTADEAARV
ILDGVRRNKR RVLIGRDARA ADWLARTLPA AYQALVVMQT RRMKRVAEKR ARRAAQIDGK
RA