| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4847 |
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| Symbol | |
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| ID | 6279918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 963065 |
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| End bp | 966523 |
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| Gene Length | 3459 bp |
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| Protein Length | 1152 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642615934 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001888582 |
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| Protein GI | 187919551 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000971365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0494922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGCT TATCGAGCGT CGTAACTGCA ATCCAAGCGC ATTACGACGT GGTTGTGGTG
GGTTCCGGCT ACGGCGGCGG GATCGCCGCG AGCCGTATGG CGCGCGCCGG GCGCCGCGTG
TGTGTGCTCG AACGTGGGCG CGAGTTCATG GCCGGTGAAT TTCCCCGCAC GCCGTTTCAG
GGCGCCGAAG AAGTGCAATA CAACACGGCG CTCGCACATA TCGGCTCGCC GCTGGCGTTG
CTCGAAGTGC ATGTGAACGA CGACGTAAAC GCGGTAGTCG GCTGCGGTCT CGGCGGCACC
TCGCTGATCA ACGCGAACGT CGCGCTCGAA GCCGATCCGC GCCTATGGGA CGACCCGCGC
TGGCCGGCCG CCTTGCGCGC CGACAAGGCG GGACGCGACA AAGGGTACGC GTCCGCGCGA
GCAATGCTGC AGCCGTCGCC GGTGCCGCAG AGCTATCCGG CCTTGCCGAA ATTGCAGGCA
CTTGAGAGAT CGGCGCAGGC GCTCGGCATG GAAAACGAGT TCTCGCGTCC GGAGATCACT
GTCACCTTCA ATGACCGCAC GAATGCCGCG GGTGTCGAGC AGAAGGCTTG CGTCGGTTGC
GGCGACTGCA ATTCCGGCTG CAATTACGAC GCCAAGAATT CGACGCACAT GAACTATCTG
CCCGACGCCG TCGCGCACGG CGCGCAGATT TTCACGGGCA CCGCCGTCCA TTCGGTGCTG
CGCGACGCAG CCACGGGAAA ATGGATCGTG GGTTACCAGC TGGTGAGCCT TGGCCGCGAA
AGCTTCGGCG CGCCGGATCT GTTCGTGAGC GCCGATATCG TCATCGTATC GGCCGGCACG
ATCGGTTCGA CCGCGTTGCT GCTGCGCTCG CGCAAGCAGG GCTTGAGCGT CTCCAACATG
CTCGGCAAAC ACTTCACCGG CAATGGCGAC GTGCTCGCCT TCGCCTACAA CACCGAGCCG
GTGATCAACG GCGTCGGCTG GGGCGCGCAT GAAAAAGGCG AGATTCCGCC GGTCGGGCCG
ACTATCACCG GCCTCATCGA TCATCGCGAG ACGCCGAATG TCAGAGACGG CTACGTGATC
GAAGAAGGCT CGCTCGCCGG TCCGGTGGGC GCGGCGCTGG TCGGCCTGCT CGGCGCCGCC
GCGCCGCTCG TAGGGGTGGA TGTCGCGCCG CGCTCCGTCG CGGAACAGCT CGCCTACGAC
GCCCGCGTCG CCACGAGCTT TCTGCGCGGC CCCTATCACG GCGCGCTCCA TCACACGCAA
AGCTACCTCG TCATGGCGCA CGACGACGAG AACGGCGAGA TCGACGTGGA CGACAAAGGC
CAGCCGCGCA TCGTGTGGGA GAACGCCGGC AAGCAGCCGA TCTTCCAGGC GGTCGAAGAG
GTGCTCAAGC GGGCGACCGT GCCGCTTGGC GGCAAATACA TGCGCAATCC GATTTCCACC
GATATTCTCG GCAATCGCAC CGTCACCGTG CACCCGCTCG GCGGCTGCGG CATGGGCGAA
GATGCGGAAC ACGGCGTGGT CGATCATATG GGCCGCGTGT TCTGCGGCGC CACGGGCAAC
GCGGTGCACG ACGGACTGTA TGTGATGGAC GGCGCGGTTA TGCCCATGTC GCTCGGCGTC
AATCCGCTGC TGACGATTTC CGCGCTGACC GAACGCAATT GCGAGCTGCT GCTCGCCACC
CACCCGCTGA ACGCCGCGCC GGCGGAAGGC GCCGCCGTTA CGCCGACCCT GCCGCCTCCG
CCGACGCCGC AGGCCGCGTC CTCGTCATTG ACGCCCTCCT CGCCGCAAAA GATCGGCCTG
CACTTCACCG AAACGATGGT CGGCACCTAC ACGCCGAACG TTGCGGGCGA AGCGGCCACG
AGCCCGATGG AATTCACGCT GACCGTCGAA TCGGAAGACC TTGCCGACAT GATTAGCAAT
CCGCAGCATC TGGCGCAAAC GGCCGGCACG CTGACCTGCC CCGCGCTCTC CGCGCAACCG
ATGACGATCT CCAACGGCAC CTTCAATCTG TTCGTGGTCA ACGAGTCGGA CGTGGACGAG
CGCAACATGA ATTACCGCAT GACGCTCAAC GCCACCGAAG GCAAGACGTA CTTTCTGAGC
GGCAAGAAGA TCATCACGCG CACTTCGCCG ATCAATCTAT GGGAGCAGAC CAACACGCTC
TATGCGGAGG TCCGCGAGTC GGCGCAAGCC GATGCGCCGC TGCTCGGCAA GGCGACACTG
ATCATCACGC CGGAAAATTT CCTCAAGCAG CAGCGCACGC TCGAAGTCAC CCACGCGCCG
GATCTGAAGA CGCGTCTCGA ATGGACCCTG AAGTTCGGCA AGTTTTTCGC GGGCGTGCTG
TTCACAGAAT ACGGCGGCGT AGCCGCACCC TTGCAGTATT TCGACCCGAA AGCGGAACCG
CGTCTGAAGC GCGCGTTGCG TGCGCCGGCG CCGCAAATCG TCTTCTTCGA TACGCCCGAC
GGCACGAAGC TCAGACTCAC GCGCTATCAC GACCCCGCGC GCAAAGCGGC GCGTCCGGTG
CTGCTGATTC ACGGCTCGGG CGTATCGAGC CGCATCTACT CCACCGACCT GATCGCGACC
AACATGGTCG AATATCTGTT CGCCGCCGGC TACGACGTGT GGCTCGTGGA TCTGCGCGTC
AGCATCGAAA TGCCAAGCGT GTTCGTGCCG ACCAATGTCG ACAAGGTGGC GCGCGAGGAC
ATTCCGTCGG CGGTCGCCAA GATCCGCGAA TTGACCGGCG TCCCGGAGAT TCAGGCGCTC
GGGCACTGCA TGGGCGGCGT GGCGCTGACC ATGTCGCTGC TGTATGGACT CGAAGGCGTG
CGCTCGGTGT TCATTTCGCA GGTGTCGGCG CATCCGGTGC CGGGCACGCT GGAGAAGATC
AAGGCTGGCC TGCATATTCC CGACTTCATG GAACATCTCG GGCTGATGGA CGTGACCGCG
TATACGGAAC ACAAGTCGTG GCCGCAGAAC CTGCTCGACG AAGCGCTCAA GTTTTACCCG
CTCAATCATA AGGAAGGTTG CGGCAATCCG ATCTGCCATC GCGCGACCTT CCTGTATGGC
CTGCTCTACG AGCATGAACA GTTGAACCAG ACGCTTCACT CGAACCTGCA GGAAATTCTC
GGTGTGCACG ACGTCGGCGT ATTCAAGCAT CTGGCCACGA TGGTGAGAGC ACACAAGGTG
GTCGATGCCG AAGGCAAGGA TGTCTATCTC ACCGGCACCG ACGGCATGAA AGGACTGGAG
GGCATGCGCC GGCCGATCGG GTTCATTCAC GGCGATAAAA ACGAAACCTA TCTGCCGATC
AGCACGCAAC TCACCTACGA GATGCTGGTC AAGCATTTCC CCGAGCAGCC CTACGAGCGA
ACCATCATTC CCGGCTATGG ACACATCGAC TGCATCTTCG GGAAGAATGC CGCCTTGGAT
GTCTATCCGA TAATCGTGAA GTATCTGGAC GCGCATTGA
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| Protein sequence | MNRLSSVVTA IQAHYDVVVV GSGYGGGIAA SRMARAGRRV CVLERGREFM AGEFPRTPFQ
GAEEVQYNTA LAHIGSPLAL LEVHVNDDVN AVVGCGLGGT SLINANVALE ADPRLWDDPR
WPAALRADKA GRDKGYASAR AMLQPSPVPQ SYPALPKLQA LERSAQALGM ENEFSRPEIT
VTFNDRTNAA GVEQKACVGC GDCNSGCNYD AKNSTHMNYL PDAVAHGAQI FTGTAVHSVL
RDAATGKWIV GYQLVSLGRE SFGAPDLFVS ADIVIVSAGT IGSTALLLRS RKQGLSVSNM
LGKHFTGNGD VLAFAYNTEP VINGVGWGAH EKGEIPPVGP TITGLIDHRE TPNVRDGYVI
EEGSLAGPVG AALVGLLGAA APLVGVDVAP RSVAEQLAYD ARVATSFLRG PYHGALHHTQ
SYLVMAHDDE NGEIDVDDKG QPRIVWENAG KQPIFQAVEE VLKRATVPLG GKYMRNPIST
DILGNRTVTV HPLGGCGMGE DAEHGVVDHM GRVFCGATGN AVHDGLYVMD GAVMPMSLGV
NPLLTISALT ERNCELLLAT HPLNAAPAEG AAVTPTLPPP PTPQAASSSL TPSSPQKIGL
HFTETMVGTY TPNVAGEAAT SPMEFTLTVE SEDLADMISN PQHLAQTAGT LTCPALSAQP
MTISNGTFNL FVVNESDVDE RNMNYRMTLN ATEGKTYFLS GKKIITRTSP INLWEQTNTL
YAEVRESAQA DAPLLGKATL IITPENFLKQ QRTLEVTHAP DLKTRLEWTL KFGKFFAGVL
FTEYGGVAAP LQYFDPKAEP RLKRALRAPA PQIVFFDTPD GTKLRLTRYH DPARKAARPV
LLIHGSGVSS RIYSTDLIAT NMVEYLFAAG YDVWLVDLRV SIEMPSVFVP TNVDKVARED
IPSAVAKIRE LTGVPEIQAL GHCMGGVALT MSLLYGLEGV RSVFISQVSA HPVPGTLEKI
KAGLHIPDFM EHLGLMDVTA YTEHKSWPQN LLDEALKFYP LNHKEGCGNP ICHRATFLYG
LLYEHEQLNQ TLHSNLQEIL GVHDVGVFKH LATMVRAHKV VDAEGKDVYL TGTDGMKGLE
GMRRPIGFIH GDKNETYLPI STQLTYEMLV KHFPEQPYER TIIPGYGHID CIFGKNAALD
VYPIIVKYLD AH
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