| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4812 |
|---|
| Symbol | |
|---|
| ID | 6278381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 926458 |
|---|
| End bp | 927759 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615899 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001888547 |
|---|
| Protein GI | 187919516 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.405857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00118748 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCG AAGCGCAGTT GACCGGCGAC GCCGAGCCTT ATGGCGAGTC CGGTGCAGGA
CAAGGCCCGT TCGCGTGGTA TCGGCAGATC TCCGCCAGCG AGAAGCGCGC CTTCTGGAGT
TGCAAGATCG GCTACGTGCT CGACGCCATG GACACGCAGT TCCTGAGCTT CGTGATTCCG
ACGCTGATCG CGACCTGGAG CATCACGCGC GGCGACGCCG GTCTGATCGG CACCGTCACG
CTGCTGAGTT CAGCGCTTGG CGGCTGGGCT GCCGGCGTGC TGTCGGATCG TATCGGCCGG
GTGAAGACTT TGCAGATCAC GATTCTCTGG TTCGCGGTCT TCACGCTGGC TTGCGCGCTG
GCGCAGAATT TCTCGCAGTT GCTGTGGGCG CGCGGGCTGA TGGGTCTCGG CTTTGGCGGC
GAGTGGACGG CGGGCGCGGT ACTGATCGGC GAAGTGATCC GCGCGCGCGA TCGCGGCAAG
GCGGTGGGGC TCGTCCAGGC GGGTTGGGCG ATCGGTTGGG GCATTTCGAC GCTGCTCTTC
ATGGCCGTGT TCTCGCTGGT CCCGGCCGAT TACGCCTGGC GCGTGCTGTT CGCCATCGGC
ATTGCGCCGG CGCCGTTCGT GATCTGGATC CGCCGCTTCG TCGACGAGCC CGAAGTGCAT
CGGCAGCAGA AAGCGGCGCA GGCCGCCACG CAAACGCGCG CTTCGCTGTT CGATATTTTC
CGCGGCGAGA TTGTCTGGAC GACACTGCGC GCGTCCGTGC TGGCTACCGG CGTGCAAGGC
GGCTACTACG CGGTGACCAC CTGGCTGCCG ACGTATCTGA AAACCGAACG GCATCTGAGC
GTGATCGGCA CCGGCAGCTA TCTCGGCGTG GTGATCGTCG GCTCGTATTG CGGCTATCTG
ACGGGCGCTT ATGTCAGCGA CAGGATCGGC CGCAAGCGCG CCTTCATTGC GTTCGCCCTG
GCGTCGTGCG CGATTGCACT GATCTACACG CAACTGCCGC TCGACAATCT CTCGATGCTC
GTGCTCGGTT TCCCACTCGG CTTCTGCGCG TCGGGCATTT TCTCGGGCAT GGGCGCGTTC
CTTACCGAGC TGTTCCCCAC GCGGATTCGC GGCTCCGGCC AAGGCTTCTG CTACAACTTC
GGGCGAGCGG TCGGCGCGAC GTTTCCGTTC CTGATCGGCT ACGTGTCGCA ATCGATGACG
CTCGGCCACG CGATCGGCGT GTTCGCCGCG GCGGCGTACG GCATCGTGAT CCTCGCCGCG
TTGACGCTGC CTGAAACCAG AGGGCGGCAG CTCAGCGCCT GA
|
|---|
| Protein sequence | METEAQLTGD AEPYGESGAG QGPFAWYRQI SASEKRAFWS CKIGYVLDAM DTQFLSFVIP
TLIATWSITR GDAGLIGTVT LLSSALGGWA AGVLSDRIGR VKTLQITILW FAVFTLACAL
AQNFSQLLWA RGLMGLGFGG EWTAGAVLIG EVIRARDRGK AVGLVQAGWA IGWGISTLLF
MAVFSLVPAD YAWRVLFAIG IAPAPFVIWI RRFVDEPEVH RQQKAAQAAT QTRASLFDIF
RGEIVWTTLR ASVLATGVQG GYYAVTTWLP TYLKTERHLS VIGTGSYLGV VIVGSYCGYL
TGAYVSDRIG RKRAFIAFAL ASCAIALIYT QLPLDNLSML VLGFPLGFCA SGIFSGMGAF
LTELFPTRIR GSGQGFCYNF GRAVGATFPF LIGYVSQSMT LGHAIGVFAA AAYGIVILAA
LTLPETRGRQ LSA
|
|---|
| |