Gene Bphyt_4809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4809 
Symbol 
ID6278393 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp922665 
End bp924314 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content65% 
IMG OID642615896 
ProductABC transporter related 
Protein accessionYP_001888544 
Protein GI187919513 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0173038 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00297179 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGCATC CCGCTTCCGA ACCGAATCCG CCAGTTGGCG GCGCCGGCAA CGTCCAAGCG 
ACCACCGGCA TGACCGGCGC CGCCGCAACC CAAGCCGGCG GCACCACGAA CGCACTCGAA
CCCATTCTCG CTACCGCGGG CGTCAGCAAG ACATTCCCCG GCGTGAAGGC GCTGCAGCGC
GTCGATTTCC GCCTGTTTCC CGGCGAGATT CACACGCTGA TGGGGCAGAA CGGCGCAGGC
AAATCTACTT TAATCAATGT GCTTACCGGC GTGCTGGCAC CGGACGAGGG CACGATCCGC
CTCGGTGGCG AGCTGGTGGC GTTCGCCTCG CCGCAGGAAG CCGAAGGCGC CGGCGTGCGG
ACGCTATACC AAGAAGTAAA CCTGTGCCCG AACCTCTCGG TGGCCGAGAA CATTTTCGCG
GGCCGGCAAC CGAGGCGCTT CGGCGCGATC GACTGGCCCG ACATCAAGCG GCGCGCCCAG
GCCGCGCTGG CGCGCCTCGA CGTGACACTC GACGTCACCC GTTCGCTCGA CGCCTATCCG
ATCGCCGTGC AGCAGATGGT GGCCATCGCG CGGGCGCTCT CGGTGGACGC ACGCGTCTTG
ATCCTCGACG AACCGACCTC GAGTCTCGAC GACGGCGAAG TAAGCCAGCT TTTCAAAATA
CTTCGGCATC TTAAGCAATC GGGCATTGCA ATTCTTTTCG TCACGCACTT CATCGAGCAG
ACGTATGCCA TCTCCGATCG TATAACGGTA ATGCGCAATG GCGAGCGCGA AGGCGAATAT
CTCGCGCGCG ATCTCCCGGC CGATCAACTC GTGTCGAAGA TGGTCGGCCA CGAGCGCATG
AGCGCGCGTT TGCGCGAAGC CGCGCACGAA GGGCATCAAG GGCACGAAGC TCACGCAGGG
CCGCAAGCCG CGCAGGCTGT CCAGCCGTTC GTCGAGTTGC GTGGCGTCGG ACGGCGCGGC
ACGATGCAGC CGATCGACCT CGACGTGCAG CCGGGCCAAA TCCTCGGTCT GGCCGGTTTG
CTCGGTTCGG GCCGCACGGA AACCGCGCGG CTGTTGTTCG GCGCGGACCG TGCCGACAGC
GGCACGATTC TGGTGGAAGG CCGGCCTGTG CGGCTGCGTT CGCCGCGCGA CGCGGTGCGC
CACGGCATCG GCTATTGCGC GGAAGACCGC AAGAAAGAGG GCATCGTCGC CGAACTGTCG
ATCCGCGACA ACATCCTGCT GGCTTTGCAG GCGCGGCGCG GATGGTGGCG CAAGATCAGC
CGGCAGCGCG CGCGCGAGCT GGCCGATCTG TGGATCGAGC GGCTCGGCAT CAAGGCCGCC
GATGCGGAAC AGCCAATCGG CCTGCTGTCC GGCGGCAATC AGCAGAAAGC GCTGCTGGCG
CGCTGGCTCG CGACCGATCC CAAACTGCTG ATTCTCGACG AACCGACGCG CGGCATCGAT
GTCGCGGCCA AGTTCGACAT CATGGACCGG CTGCTGGCGT TATGCGCGAG CGGGTTGAGC
ATCCTGTTCA TTTCGTCGGA GATTAGCGAG GTGCTGCGCG TGAGTCATCG CGTAGCGGTG
TTGCGCGACC GTCGCAAGAT TGCCGAAGTG GCCGGCAAGG CGTCGAACGA AGACAATATC
TATCGACTCA TCGCGGGGAG CGGCGAATGA
 
Protein sequence
MTHPASEPNP PVGGAGNVQA TTGMTGAAAT QAGGTTNALE PILATAGVSK TFPGVKALQR 
VDFRLFPGEI HTLMGQNGAG KSTLINVLTG VLAPDEGTIR LGGELVAFAS PQEAEGAGVR
TLYQEVNLCP NLSVAENIFA GRQPRRFGAI DWPDIKRRAQ AALARLDVTL DVTRSLDAYP
IAVQQMVAIA RALSVDARVL ILDEPTSSLD DGEVSQLFKI LRHLKQSGIA ILFVTHFIEQ
TYAISDRITV MRNGEREGEY LARDLPADQL VSKMVGHERM SARLREAAHE GHQGHEAHAG
PQAAQAVQPF VELRGVGRRG TMQPIDLDVQ PGQILGLAGL LGSGRTETAR LLFGADRADS
GTILVEGRPV RLRSPRDAVR HGIGYCAEDR KKEGIVAELS IRDNILLALQ ARRGWWRKIS
RQRARELADL WIERLGIKAA DAEQPIGLLS GGNQQKALLA RWLATDPKLL ILDEPTRGID
VAAKFDIMDR LLALCASGLS ILFISSEISE VLRVSHRVAV LRDRRKIAEV AGKASNEDNI
YRLIAGSGE