| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4720 |
|---|
| Symbol | |
|---|
| ID | 6279969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 819128 |
|---|
| End bp | 822193 |
|---|
| Gene Length | 3066 bp |
|---|
| Protein Length | 1021 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615803 |
|---|
| Product | acetoacetyl-CoA synthase |
|---|
| Protein accession | YP_001888456 |
|---|
| Protein GI | 187919425 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[COG3319] Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases |
|---|
| TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.622636 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCACG AGAATTTCGT CGGGGCCAGC ATGCGCATGT ATGCGCGCGA ACCCGTATTT
CAGAACTTGC CGGAGCGCGT CGCCGGATCA CGCATGTCAC GCTTTACCGC TGCGCTGGAA
AACTTCACCG GTGAGCGTTT CGCGGACTAT CCAGAACTGC ATGCTTATTC GACGCGCGAA
TTTCGCCGGT TCTGGCAGTG CTTTCTGCAA TGGACGGAGG GAATGGAATG GGGCGGTAAA
GCGGAACCGG CCTGCGTCGG CGACGAATGC GAGACCGCTT CCTTCTTTCC AAACGTCGAA
CTGAATTACG CCCAAAGCGT TCTTGGATCG AAGATCGCGC CGGACGAGTC GCCGGCACTC
ACCGCGCGTT ATGCCGATGG CCGCCGCGAA ACGATGACGC GCGGCGAGCT GCGCGAGCGT
GTCGCGCGCC TTGCCTGTTC GCTCAACGAG CTCGGTCTGT GCCCGGGCGA CCGCGCGGTC
GCGATAATGC GCAACGACGC GCACGCAATC ATCGCCGCGC TCGCGGTCAC GGCGCTGGGC
GCGACGCTCT CCACCGCGGC GCCCGAAACC GGCGTGCAGG CGATCCTCGA CCGCTTCGAG
CCGCTCGAGC CGCGCATATT GTTCGCGCAC ACGACGCAGC GCTCATTCGA TACGGCCGGC
TCGATCGCTT CGCACGTCGC CGCCGTGGCC GCCGCGTTGC CCACGCTCAC GCACGTCGTC
TGCCTGGATG AAACGCCGCT GCCGAGCACG GTGAGCCAGC CTCAGCATTC GCTGCGCGAT
CTCATCGTTC AGGGTGACGC CGCGCGCTTC GCATGGCGGC GCTTTCCATT CAATCATCCG
CTTTTCATCA TGTTCTCGTC GGGCACGACG GGAAAACCCA AGTGCATCGT GCACGGTGCC
GGCGGCACCT TGCTCGAACA TCTGAAAGAG CACCAGTTGC ACAGTGACCT GGGTCCTGGC
GACAAGCTGT ACTTTCACAC AAGCTGCTCG TGGATGATGT GGAACTGGCA ATTGTCAGCG
TTGGCTTCGG GCGTCGAGAT CGTCACGTAC GACGGACCGG TTTCGGAAGT CGACACGCTT
TGGCGGATGG TCGCCGATGA GCGCGTGACC GTGTTCGGCA CGAGTCCGGC CTATCTGAAG
ATGTGCGAGG ACGCGGGCCT GAAACCCGGC GAGCAGTTCG GGCTGCACGC GCTGCGCGCG
ATGATGTCGA CGGGCGCCGT GCTGTACGAC TCGCAGTTCG AATGGGTGCG CGCCTACGTC
AAGCCGCTGC AGCTTCAGTC GATTTCCGGC GGCACCGATA TCATCGGCTG CTTCGTGCTG
GGCAATCCGA ATCTGCCGGT CTATGCGGGC GAAGCACAGT GCAGGAGCCT GGGCCTCGAT
GTTCAGGCGT GGAACGAGGG CGCGCCCACC TCCATGACCG GCGAGCTGGT TTGCGTCAAT
CCGTTTCCGT CGCGCCCGCT CGGCTTCTTC GGGGACGCGG ACGGCTCGCG CTTTCACGCC
GCCTATTTCA AGGCGAATCC GGGCGTGTGG ACGCACGGCG ACATCATCGA GTTTTCGGCG
CAGGGATCGG CTCGTCTGCA CGGACGCAGC GATGGCGTGC TGAATGTGCG CGGCATCAAC
GTGAGCCCCG GCGAGATCTA CCGTATTGTC AGCGGTATTG GCGAGATCAA TCAGTCGATG
GTCGTCGCGC AGACCACCCA TGACGCGAGC GGATCGGGCC AGCGTGTCGT GCTGCTGCTC
GTGTTGCGGC GGGGCGCGAA GATGAGCGCC GCGCTCGCTT CGCGGGTACG GCGTGAATTG
ATGCTGCAGG GTTCGGCGGC GCTTGTGCCG GACGTGATCG CCGAAGTCGA AGCGCTGCCC
GTCACGCACA ACGGCAAGGC TTCGGAGGCG GCCGCGCGCG ATGCCGTGAA CGGCTTGCCG
GTGCGCAACC TGTCGTCGCT GGCGAACCCC GGATGCGTCG AGAAGATCAG CGCGCATCCC
GCGCTTGCCC GCACACGTCG CGAGTTGCCG GAACCGGGTG ACTCGGCCGA GCAGGTCGAA
GTCTATCTAT GTGCGCTGTG GGAGCAGCTT TTCAGCTTCT CGCCGGTCAG TCGCGACGAC
AACTTCTTCG AACTCGGCGG CCATTCGCTG CTCGCCGCGC AGATGCTCGC CGAAATACGG
CTGGCAACCG GCCGAACGCT GCCGCTTGCC ACGCTCATCA TCGCGCCGAC CATTGCGCGG
CTCGCGACGG TCATCACAGG CGAGCGAACG CAGGACGCGC ATCCGAACGT CGTGCCGATG
CGTGCGGGTC GCGGAAGGCC TGTGTTCATG CTTCACAGCA TCACGGGTTC GGTGATGGAG
TGCCTGACGC TGGCCGGCGC GCTGGCCAGC GAGCGGCCTG TGTACGGTTT GCAGGCGCGC
GGGCTCGACG GCGACGAGGA GCCGCAGCGA TGCGTCGAGG AAATGGCGAG GGTCTACGTC
CGGCAGATGC GCGCGGTGCA GCCGCGCGGT CCGTATGCAC TGGTTGGCTA TTCGTTTGGC
GGCCTGGTCG CGTTCGAGAT GGCGCAGCAA CTTGTGGCGG CGGGCGAAAA GATCGAGTTG
CTGTGTCTGC TCGATACTTA CGTGGACGAG CGCTATTTGC CGTTGCATGA GTGGCTGTCC
TTCCAGTACG AAGTCATGGC GGAGCGCGTG CGGGCATTTC GCGCACTGTC CGCGCGCGGT
CGCATGGCCT ATATGAAGGA CAGAGTGTTC GGCGCCGCTG ACCGGATTCG CATGCGACTC
GGCAGGATGG CCGCGAGGCC GGCAGCCGAT ACGCAGGGGC TGCCGCCGGT ACTGCGGCAG
GTGCGCGAGT CGATGCGCGT CGCGATGGCG ACGTATCGTC CGCGTCGCTA TCTTGGCAGT
CCGATCGTCT ACGTGCGCGC GTCCGGCAGG GAAGGCGGGC AGGGCGATCC GCTGCCGGCA
TGGCAGCGCG TGGCAAGGAG CGGGCTGCTG GTGAAGACCA TCGATGGCGC CCATACCGAT
CTCGTTGTGG AGCCGAACCT GGCGATGGTG GCCGATACGC TCGCGCGCAG GCTGGCCGGC
GCGTAG
|
|---|
| Protein sequence | MNHENFVGAS MRMYAREPVF QNLPERVAGS RMSRFTAALE NFTGERFADY PELHAYSTRE
FRRFWQCFLQ WTEGMEWGGK AEPACVGDEC ETASFFPNVE LNYAQSVLGS KIAPDESPAL
TARYADGRRE TMTRGELRER VARLACSLNE LGLCPGDRAV AIMRNDAHAI IAALAVTALG
ATLSTAAPET GVQAILDRFE PLEPRILFAH TTQRSFDTAG SIASHVAAVA AALPTLTHVV
CLDETPLPST VSQPQHSLRD LIVQGDAARF AWRRFPFNHP LFIMFSSGTT GKPKCIVHGA
GGTLLEHLKE HQLHSDLGPG DKLYFHTSCS WMMWNWQLSA LASGVEIVTY DGPVSEVDTL
WRMVADERVT VFGTSPAYLK MCEDAGLKPG EQFGLHALRA MMSTGAVLYD SQFEWVRAYV
KPLQLQSISG GTDIIGCFVL GNPNLPVYAG EAQCRSLGLD VQAWNEGAPT SMTGELVCVN
PFPSRPLGFF GDADGSRFHA AYFKANPGVW THGDIIEFSA QGSARLHGRS DGVLNVRGIN
VSPGEIYRIV SGIGEINQSM VVAQTTHDAS GSGQRVVLLL VLRRGAKMSA ALASRVRREL
MLQGSAALVP DVIAEVEALP VTHNGKASEA AARDAVNGLP VRNLSSLANP GCVEKISAHP
ALARTRRELP EPGDSAEQVE VYLCALWEQL FSFSPVSRDD NFFELGGHSL LAAQMLAEIR
LATGRTLPLA TLIIAPTIAR LATVITGERT QDAHPNVVPM RAGRGRPVFM LHSITGSVME
CLTLAGALAS ERPVYGLQAR GLDGDEEPQR CVEEMARVYV RQMRAVQPRG PYALVGYSFG
GLVAFEMAQQ LVAAGEKIEL LCLLDTYVDE RYLPLHEWLS FQYEVMAERV RAFRALSARG
RMAYMKDRVF GAADRIRMRL GRMAARPAAD TQGLPPVLRQ VRESMRVAMA TYRPRRYLGS
PIVYVRASGR EGGQGDPLPA WQRVARSGLL VKTIDGAHTD LVVEPNLAMV ADTLARRLAG
A
|
|---|
| |