| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4648 |
|---|
| Symbol | |
|---|
| ID | 6280068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 738280 |
|---|
| End bp | 740211 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615735 |
|---|
| Product | SMP-30/Gluconolaconase/LRE domain protein |
|---|
| Protein accession | YP_001888388 |
|---|
| Protein GI | 187919357 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.652579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCGCAA GAAAACGAAT TCATGCTGCA CTCCTCTTCG CGATGATCGC CACGCTTGCG
CCGGCCTGTC AGGCGCAAAA CACCACTGAT TGGCTGGCGA ACACCTATGG CACTCTCGCC
GCTCATGTTG GGAACGCCGC TCGTTCCATG TGGGTCGCGC CCGAAGGCGT CATCTACACG
GCCTCCATGT GGGACGAGTA CGAGGGCGGC GTCGCAATCT ATCAGAACCA CCGCAGCGCC
GGATCCATCG GCGCTCACGG CGAATTTCAG GGCAGCGCCA TCACGGGTAA TGCCAAGTCG
ATTTTCGTGG CGCTGCAGTA CAGCGCGTCG TACGGAAGCG GCGCGGTGGG ACGATACAAC
CGCGCCACCG GCGCTCGCGA TCTTTTCATT CAGGTCACGG CGTCGAAGAA CCAGCCGCGC
GTCGACGTCG TCACCGGACT CGCCACGGCG GGCTCGCTGC TTTATGCGAG CGACATCGAC
GGCAATCGCG TGCGGATCTT CACCACCGAC GGTATCTGGC AGAAAGACAT CAACGTTCAG
AGCCCAGGGG CGCTTGCCGT GGATGGCGCC GGCAACGTCT GGGTCGCGCA GAAAAGTGCG
GGCACGATCG TCGAGTTCAG TCCAACTGGG GCGCTGCTGA ATACCATTCA GATGCCTGGC
GGATCGCAGC CGTCGGCGCT CTATTTCGAT GCGTCGTCGG GACAGCTCAT GGTGGGCGAT
GAAGGGCCCG ACATGAACAT CAAGCGCTAC ACGCTCTCGG GTACGCCGAC GCTGGCCGGT
ACGTTCGGCA TTCAGGGCGG TTATCTCGAC ACCACCACGG GCATCAAAGG CCAGGTCGGC
GCAAAGCGCT TCACCCGCGT CGCCGGCATC GGCAAGGACA CCGCCGGCAA CCTCTATGTG
CTCAACAACC CGTGGGGCGG AAGCTGGGAC CTCGGCCGCA ACGGCGGCAC CGACATTCAT
GCGTATAGCA GCGCCGGCAC CCTGCAGTGG ACGCTGCGCT CCCTCAACCT CGAGGGCGAC
GCCGTACCGG ACCCGCTCAC GGACAGCACA ATGTTCTATG GCGGCACCAA CATCTACAGC
GGCGGCGCAG GCGGCGCCTT CGTCGCGAAC ACCGTCGATC CGTTCGCCTA TCCGTCGGAC
CCGCGCATCG ACATCAACGA TACGTCACGG GACGAGCACT TCGCTCATCT GGCCACGGTC
GGCGCCAACC GGATCCTTGT GGCGTCCGGC CAGAATCCCG ACGTCTACTA CTTCTTCCAC
TTCAATGCCG CGAACGGCTA CATCGCGATA CCGGACGCCA CGCTTCCCGG CGCGGCGTTC
AAAACCACCG CCCTGGTCAG GGACGGGTTC TGCATCGACA GCAAGGGCGG TGTGTGGGCC
GGTCTGGACA GGACCGGCAA CATCTATCAC TACCCGCTGA CCGGCTTCGA CGCCAGCGGC
AAGCCGACCT GGGGAGCCGG CATTCCCATC CGCATTCCCG CGAGCATCCA GCCGCTGACG
CGCATCCTGT ACCTCGCGGA CAGTGACACG ATGATTCTCG GACAGGGCGT GGTCGGGAGT
ACGGATTGGA CCGGGATAGG CACGCGGATC GAGGTGTATC ACGGCTGGAG TGCGGGCAAT
ACCACGAAAC CCAATCCGGT GATCAACCTC ACCCACGCCG GCGCCAAGTC GATTGACGCG
GCCGGCCGCT ATCTTTTTGT CGGCTACTGG TTCGGCAGCG GGCAAGCTTT GCCGGACATC
GACGCGTTCA ATCTCTCCAC AGGCAACCTC GACGCAACGC TGGTTAACAC CAGCCCCCGT
ACCGTGGACG CCAGCAGCGC GATCGATGCG ATGTACAGCG TCAAAGCCTA CCTTCGATCG
ACCGGCGAGT ACGTGGTCAC GAAGAACAAC GTCAAAGGCT CCAGCATTAC TGTCTTTCGC
TGGACGCCAT GA
|
|---|
| Protein sequence | MVARKRIHAA LLFAMIATLA PACQAQNTTD WLANTYGTLA AHVGNAARSM WVAPEGVIYT
ASMWDEYEGG VAIYQNHRSA GSIGAHGEFQ GSAITGNAKS IFVALQYSAS YGSGAVGRYN
RATGARDLFI QVTASKNQPR VDVVTGLATA GSLLYASDID GNRVRIFTTD GIWQKDINVQ
SPGALAVDGA GNVWVAQKSA GTIVEFSPTG ALLNTIQMPG GSQPSALYFD ASSGQLMVGD
EGPDMNIKRY TLSGTPTLAG TFGIQGGYLD TTTGIKGQVG AKRFTRVAGI GKDTAGNLYV
LNNPWGGSWD LGRNGGTDIH AYSSAGTLQW TLRSLNLEGD AVPDPLTDST MFYGGTNIYS
GGAGGAFVAN TVDPFAYPSD PRIDINDTSR DEHFAHLATV GANRILVASG QNPDVYYFFH
FNAANGYIAI PDATLPGAAF KTTALVRDGF CIDSKGGVWA GLDRTGNIYH YPLTGFDASG
KPTWGAGIPI RIPASIQPLT RILYLADSDT MILGQGVVGS TDWTGIGTRI EVYHGWSAGN
TTKPNPVINL THAGAKSIDA AGRYLFVGYW FGSGQALPDI DAFNLSTGNL DATLVNTSPR
TVDASSAIDA MYSVKAYLRS TGEYVVTKNN VKGSSITVFR WTP
|
|---|
| |