| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4535 |
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| Symbol | |
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| ID | 6278362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 609884 |
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| End bp | 613069 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642615625 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001888278 |
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| Protein GI | 187919247 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.736092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATAT CCAAATTCTT CATCGATCGA CCGATCTTTG CCGGCGTGCT GTCGGTACTG
ATCCTGCTGG CGGGCATTAT TTCGCTCTTC AAGCTGCCGA TCTCGGAGTA TCCGGAAGTC
GTGCCGCCTT CGGTGGTGGT GCACGCGCAG TATCCGGGTG CGAATCCGAA GGTGATCGCC
GAAGCGGTCG CTTCGCCGCT CGAAGAGCAG ATCAACGGCG TCGAGAACAT GCTGTACATG
CAGTCGCAAG CGAATAGCGA CGGCAATCTC ACGCTCACGG TGACCTTCAA GCTTGGCACC
AATCCGGACC TCGCGACGCA GCTCGTGCAG AACCGCGTCA ATCAGGCGCT GCCGCGTCTG
CCGGAAGACG TGCAACGCCT CGGCGTCACC ACGATCAAGA GTTCGCCCAC GCTGACCATG
GTGGTGCATT TGATCTCGCC GAACAATCGC TACGACATGA CGTATCTGCG CAACTACGCG
CTGCTGAACG TCAAGGACCG GCTCGCGCGG ATTCAGGGCG TCGGCGAAGT GCAGTTGTGG
GGTTCGGGTG ACTACGCGAT GCGCGTCTGG CTCGATCCGC AGAAAGTGTC GCAACGCGGC
CTGACGGCGA CCGAGGTGGT CAACGCGATC CGTGAGCAGA ACATTCAGGT GGCGGCCGGT
GTGATCGGCG CATCGCCTTC GGTGCCGGGC ACGCAACTGC AGTTGTCGGT GAATGCGCGT
GGCCGTCTGA GGACTGAGGG CGAATTCGGC GACATCATCG TCAAGACCAC GCCGGACGGC
GGTGTGACTT ACCTGAAAGA TATTGCGCGG ATCGAACTCG CGGCGTCGGA GTACGGATTG
CGTTCGCTGC TCGACAACAA ACCGGCGGTG GCGCTCGCCA TCAACCAGGC GCCGGGTGCG
AACTCGCTCG CGATTTCCGA TCAGGTGCGT ACCGCGATGA AGGAACTCGC GGAAGACATG
CCGGCGGGCG TCGAATACAA GATCGTCTAC GACCCGACGC AGTTCGTGCG CTCGAGTATC
GAGGCGGTCG TACATACGCT GCTTGAAGCG ATCGCGCTGG TGGTGATCGT CGTGATCGTG
TTCCTGCAGA CGTGGCGTGC TTCGATCATT CCGCTGATCG CGGTGCCGGT GTCGATTGTC
GGGACGTTCT CGTTGCTGCT TGCGTTCGGC TTCTCGATCA ACGCGTTGTC GCTGTTCGGC
ATGGTGCTCG CCATCGGGAT CGTGGTGGAC GATGCGATCG TGGTGGTGGA GAACGTCGAG
CGGAACATCG AAAACGGGCT GAGTGCGCGC GACGCGACCT ACAAGGCCAT GCAGGAAGTG
AGCGGGCCGA TTATCGCTAT CGCGCTGACG CTCGTCGCCG TGTTCGTACC GCTCGCGTTC
ATGACCGGTT TGACGGGCCA GTTCTACAAG CAGTTCGCGA TGACCATCGC GATCTCGACG
GTGATCTCGG CGTTCAACTC GCTGACCCTG TCGCCGGCGT TGTCCGCGAT GCTGCTGCGC
AGCCATGGCG CGAAGGAAGA CTTCCTGACG CGTGTGATGA ATCGCGTGCT GGGTGGTTTT
TTCAGGCGTT TCAACAAGGT CTTTCATCGC GGTTCGACGG AGTATGGCCG CGGCGTGACC
GGCGTGCTGC GCCGTAAGGG CGCGATGCTG GCGGTCTACG CGATTCTGCT GGGCGCGACC
GTGCTGATCT CGCGCGTGGT GCCGGGCGGC TTCGTGCCGG CGCAGGACAA GGAATACCTG
ATCGCCTTTG CGCAGTTGCC GAACGGTGCG TCGCTGGATC GCACGGAGAA GGTGATTCGC
GACATGAGCT CGATTGCGCT GAAGCAGCCG GGCGTGGAGA GCGCGGTGGC GTTCCCGGGT
CTGTCGGTGA ACGGCTTCAC GAATAGCTCC AGCGCGGGCA TCGTGTTTGT CACGCTCAAG
CCCTTCAAGG ATCGCGGCAA CAAGAAGCTG TCGGCCGGTG CGATTGCCGG TGCGCTGAAT
CAGCAATACG GTGCGATCAA GGATTCGTTC GTCGCGGTGT TCCCGCCGCC ACCCGTGCTC
GGTCTCGGTA CGCTCGGCGG CTTCAAGATG CAGTTGGAAG ATCACGGCGC GCTCGGTTAC
GCGGAGTTGA ACAAGGCCGC GGAGGCGTTC GTGAAGAAGG CCGCGCAGAC GCCTGAACTC
GGCCCGACCT TCTCGAGCTA TCAGATCAAC GTGCCGCAAT TGAACGTGGA CCTCGACCGT
GTGAAGGCCA AGCAGCTCGG CGTGCCGGTC ACGGACGTGT TCAACACGAT GCAGATCTAT
CTCGGCTCGC TGTATGTGAA CGACTTCAAC CGCTTTGGCC GTGTGTATCA AGTGCGGGTG
CAGGCGGACG CGCCGTTCCG TCAACGCGCC GACGACATCC TGCAACTGAA GACGCGCAAT
GCCGCGGGCG ACATGGTGCC GTTGTCGTCG CTCGTGACGG TAACGCCGAC GTTCGGTCCG
GAAATGGTGG TGCGTTACAA CGGCTATACG GCTGCCGACA TCAACGGTGG GCCTGCGCCG
GGCTTCTCGT CGGGTCAGGC GCAAGCCGCG GCCGAACGCG TGGCGGCGGA AGTTTTGCCG
CACGGTGTGA AGCTCGAATG GACCGACTTG ACGTATCAGC AGATTCTGGC CGGCAATGCG
GGCTTGTGGG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TCGTACTCGC CGCACTGTAT
GAAAGCCTGA CGCTGCCACT CGCTGTGATT CTGATCGTGC CGATGAGCGT GCTGTCCGCG
CTGACCGGCG TGTGGCTCAC GGGTGGCGAC AACAACATCT TTACGCAGAT CGGTTTGATG
GTGCTGGTGG GCTTGTCGGC GAAGAACGCG ATTCTGATTG TCGAGTTCGC TCGCGAACTG
GAGCATGACG GGCATACGCC GCTGTCGGCG GCGATCGAGG CGAGCCGTTT GCGTCTGCGG
CCAATTTTGA TGACGTCGAT CGCGTTCATC ATGGGCGTGG TGCCGCTGGT GCTATCGAGC
GGAGCCGGTT CGGAGATGCG TCATGCGATG GGTATCGCGG TGTTCTTCGG CATGCTCGGC
GTCACGCTGT TCGGTCTGAT GCTGACCCCT GTGTTCTATG TGGTGCTGCG GACGCTGGCG
GGCGGAACGA TTCACGTCGC GCAGAAAGAT TCGCCGCACT ATGGCGCGCC GGTGACGGAC
GCTTGA
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| Protein sequence | MNISKFFIDR PIFAGVLSVL ILLAGIISLF KLPISEYPEV VPPSVVVHAQ YPGANPKVIA
EAVASPLEEQ INGVENMLYM QSQANSDGNL TLTVTFKLGT NPDLATQLVQ NRVNQALPRL
PEDVQRLGVT TIKSSPTLTM VVHLISPNNR YDMTYLRNYA LLNVKDRLAR IQGVGEVQLW
GSGDYAMRVW LDPQKVSQRG LTATEVVNAI REQNIQVAAG VIGASPSVPG TQLQLSVNAR
GRLRTEGEFG DIIVKTTPDG GVTYLKDIAR IELAASEYGL RSLLDNKPAV ALAINQAPGA
NSLAISDQVR TAMKELAEDM PAGVEYKIVY DPTQFVRSSI EAVVHTLLEA IALVVIVVIV
FLQTWRASII PLIAVPVSIV GTFSLLLAFG FSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIENGLSAR DATYKAMQEV SGPIIAIALT LVAVFVPLAF MTGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALSAMLLR SHGAKEDFLT RVMNRVLGGF FRRFNKVFHR GSTEYGRGVT
GVLRRKGAML AVYAILLGAT VLISRVVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR
DMSSIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFKDRGNKKL SAGAIAGALN
QQYGAIKDSF VAVFPPPPVL GLGTLGGFKM QLEDHGALGY AELNKAAEAF VKKAAQTPEL
GPTFSSYQIN VPQLNVDLDR VKAKQLGVPV TDVFNTMQIY LGSLYVNDFN RFGRVYQVRV
QADAPFRQRA DDILQLKTRN AAGDMVPLSS LVTVTPTFGP EMVVRYNGYT AADINGGPAP
GFSSGQAQAA AERVAAEVLP HGVKLEWTDL TYQQILAGNA GLWVFPISVL LVFLVLAALY
ESLTLPLAVI LIVPMSVLSA LTGVWLTGGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL
EHDGHTPLSA AIEASRLRLR PILMTSIAFI MGVVPLVLSS GAGSEMRHAM GIAVFFGMLG
VTLFGLMLTP VFYVVLRTLA GGTIHVAQKD SPHYGAPVTD A
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