Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4510 |
Symbol | |
ID | 6277626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 579184 |
End bp | 580149 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642615600 |
Product | choline ABC transporter, periplasmic binding protein |
Protein accession | YP_001888253 |
Protein GI | 187919222 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.546563 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTGC GCATCAAAGC CCTGCTTGCC CATCTTGCGT GTCTCGCGGC GGCCGTCGGC GCCGCCGTTA CCGCGCTGCC TGCCTTCGCC CAGGACCCCG CTGCCTGCCG CGCGGTGCAT TTCGCGGATA TCGGCTGGAC CGACATCACC TCGACCACCG CGCTCGCCTC GACCGTGTTC GAAGGTCTCG GCTATCAGCC CGTGACGACG GTTGCCTCCG TGCCCATCTC GTTCGCGGGT TTGAAAAGCA AACAGCTCGA CGTGTCGCTC GGCTACTGGT GGCCGGTGCA GGAAAAAGCG ATCGCGCCGT TCGTCGATTC GAAATCGATC CAGGTGCTGC AGCCGCCTAA CCTGACCGGC GCCAAGGCCA CGTTCGCCGT GCCGAGCTAC GAATACGACG CGGGCCTGAA GACTTTCGCC GACATCGCCA AACACCGCGA TCAGCTCGAC GGCAAGATCT ACGGCATCGA GCCCGGCAGC AGCGCAAACG CGGCGATCCA GAAGATGATC GCCAACAATC AGTTCGGCCT CGGCGGCTTC AAGCTGATCG AATCGAGCGA AGCGGGCATG CTGGTCTCGG TCGACCGCGC GATCCGCGAG AAGAAATGGG TGGTCTTTCT CGGCTGGGAA CCGCATCCGA TGAACATCCA GATCGACATG AAATACCTCA CCGGCAGCGA CGGCGTATTC GGTCCGAACG ACGGCGAAGC GCGCGTTTAT ACGCTGACGT CCCCCGACTT TCTGACACGT TGCCCGAACG CGGGCAAGCT CGTGAGCAAT CTGCGCTTTT CGACGCAGCT CGAAAACGTG GTGATGCAAT CGGTGATGAA CAAGGAAAAG CCCGCCGACG CCGCCAAGGC GTATCTGAAG AAAAACCCGC AGGTACTCGA CGCATGGCTT GCCGGCGTGA AGACCTACGA CGGCAAGGAC GGCTTGCCCG CGGTCAAGGC TTATCTCGGT CTCTGA
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Protein sequence | MKLRIKALLA HLACLAAAVG AAVTALPAFA QDPAACRAVH FADIGWTDIT STTALASTVF EGLGYQPVTT VASVPISFAG LKSKQLDVSL GYWWPVQEKA IAPFVDSKSI QVLQPPNLTG AKATFAVPSY EYDAGLKTFA DIAKHRDQLD GKIYGIEPGS SANAAIQKMI ANNQFGLGGF KLIESSEAGM LVSVDRAIRE KKWVVFLGWE PHPMNIQIDM KYLTGSDGVF GPNDGEARVY TLTSPDFLTR CPNAGKLVSN LRFSTQLENV VMQSVMNKEK PADAAKAYLK KNPQVLDAWL AGVKTYDGKD GLPAVKAYLG L
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