| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4217 |
|---|
| Symbol | |
|---|
| ID | 6280108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 262759 |
|---|
| End bp | 263721 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642615315 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001887968 |
|---|
| Protein GI | 187918937 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAAA ATAACCGCAC CAGGCTGTTG ATTGCGCGAA AGGTGCCCAC AGCCGTGGCG
AATCGCGCCG AGGCCGAATT TCATGCCTTC GTGACCGAGT CCGATATGGA CGCGTGGTCG
GTCGTCGACT TTTGCAAAAA GCACGCAACG CCGGCCGTAT TGATCGGGAA GAAGTCGGGT
CTGCAAGCGG AGCACATTGC CGCGCTGCCC TCGACGGTGA AAATCATTGC GAACGCGAGC
GCGGGTTTCG ATCACATGGA TGTGGCGGCC GCCCGCGAGA GGGGAATCGT CGTCACGAAC
GCACCCGATG CGTTGACCGA ATGCACGGCC GACTTTTCCC TTCTGCTCGT GCTGGCGGCT
TGCCGCCGCG CGTCGGAATA TGAACGGATC ATGCGCAACG GTTGGGGCAA ATCATTCGGG
ATGACCGAGA TGCTGGGTAC GCGCGTCAAT GGCAAGACGC TCGGCATTGT CGGATTCGGG
CGTATCGGGC GCGCGGTCGC GAAGCGTGCG CAGGGCTTCG GCATGCGCGT GATCTATACG
GACATCAACC GTGCGGCTGC GTCGCTGGAA AATGGCGCGA CGTTTTACAA CAGCCTCGAC
GAAATGTTGC CGCACTGCCA GGTGTTGACG CTGCACGTGC CGGGCGGAGG CGTTCCGCTA
ATGACAAAAA GAGAATTTGC GCTCCTGCCG GCGGGCGCGG TTTTTGTCAA CGCGGCGCGT
GGCGCACTGG TGGATGAAGA CGCGCTCTAC GAAGCGCTGA CCTCGGGACA TCTGTTTGGT
GCAGGTCTGG ACGTGTACCG GAACGAGCCC AATGTCGATA AGCGGTTCGC CGGACTCGAC
AACGTGTTCC TGACGCCTCA CATGGCCAGC GCCACGATGG AGACGCGCGA TCAGATGGGT
TTTACGGCGC TGGATAATGT TGCCGCTGTG CTGAATGAAC GGCCTGCATT GAACCCGGTC
TGA
|
|---|
| Protein sequence | MSENNRTRLL IARKVPTAVA NRAEAEFHAF VTESDMDAWS VVDFCKKHAT PAVLIGKKSG
LQAEHIAALP STVKIIANAS AGFDHMDVAA ARERGIVVTN APDALTECTA DFSLLLVLAA
CRRASEYERI MRNGWGKSFG MTEMLGTRVN GKTLGIVGFG RIGRAVAKRA QGFGMRVIYT
DINRAAASLE NGATFYNSLD EMLPHCQVLT LHVPGGGVPL MTKREFALLP AGAVFVNAAR
GALVDEDALY EALTSGHLFG AGLDVYRNEP NVDKRFAGLD NVFLTPHMAS ATMETRDQMG
FTALDNVAAV LNERPALNPV
|
|---|
| |