| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4203 |
|---|
| Symbol | |
|---|
| ID | 6279308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 247652 |
|---|
| End bp | 249604 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615302 |
|---|
| Product | lipid A ABC exporter family, fused ATPase and inner membrane subunits |
|---|
| Protein accession | YP_001887955 |
|---|
| Protein GI | 187918924 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.089699 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGT TTAGTTGCTC CCGTAGGTTC GCTGCCGCCC AGTCGATTGA CGAATCCGCC
GTCGCCCGGA ATGTCGGCCA TGCATCGCCA AGGTCGTTCG CCTGCCTTGC CAGCCGCCGC
CTACAATCGA CAGAATATTC GATCCGCTTG GGAATCCTCA TGCCAGACGC CATGACGTCG
CCGCCGCCTT CACGCCGCAT CAGCCCGCTC TTCGCACTGT TTCCCTTCCT GCGCCCGTAT
GCCGGCCGCT GGGCGCTCGC GTTCTTCGCG CTGGTGACCT CGGCGAGCGC CACGCTGGTG
TTGCCGGTGG CGTTCAAATA CCTGATCGAT CGTGGTTTTG CCTCGGGCGA CCGGGGGCAC
ATCGATCGCT ATTTCCTCGC GCTATTTGTC GTGTCGCTGG TGCTGGCCAC CGCCACGGCA
CTGCGCTTCT ACCTCGTCTC ATGGCTGGGT GAGCGGGTCA CGGCCGACTT GCGGCGCGCG
GTCTACGATC ACGTGCTGAG CATGAGCCCG CAATTCTTCG AGACCACGCA GACGGGCGAG
GTACTGTCAC GGCTCACCGC CGACACCACT TTGATCCAGA CGGTAGTGGG CACCAGCCTG
TCGCTGGGAT TGCGCAACTT CTTCCTGTTG ACTGGCGGCG TGGCGATGCT GGCGGTGACG
AGCCCGGTGC TGTCCGGCTA CATCATCGCG ACGCTGGTCG TGGTGATCGC ACCTATTGTG
ATCTTCGGCC GCCGCGTGCG GCGGCTCTCG CGCGCGAGCC AGGACAAGAT CGCGAACACG
AGCGCGCTGG CGGGCGAGGT GCTCAATGCC ATGCCGACCG TGCAGTCGTA TACGCAGGAG
CCATTCGAGG CGCGGCGCTA TGGCGGCGCG GTGGAGACGG CCTTCGAGAC CGCGCTCACG
CGCATTCGCG CGCGCGCCTG GTTGACCGCC GTGGTGATCG TGCTGGTGTT CACCGCTATC
GTATTCGTGC TGTGGCTCGG CGCGCAGGCG GTCCTGGCCG GTCGGATGAC GGCGGGCCAA
TTGTCCCAGT TCATTCTCTA CGCCGTGTTT ACGGCCGGCG CCGTGGGCGC GGTTGCAGAG
GTATGGGGCG ATCTGCAGCG CGCGGCCGGC GCCACCGAAC GTTTGCTTCA ATTGCTGGCG
GCGCGCTCGC CGGTGCTGCA GGCCGAAACC ACAGTTGCCC TGCCTGCGCG AGGCGAGGGC
ATCCGCTTCG ACGATGTCAG CTTCTCGTAT CCATCGCGCC CAGGCATCGC GGCGCTTTCC
TCGCTCTCGC TCGAGGTTCG CCCCGGTGAA CATGTGGCAC TGGTCGGTCC GTCCGGCGCG
GGCAAGACCA CGCTGTTCCA GTTGCTGTTG CGCTTTTACG ATCCGCAAGC CGGCCGCATT
CTGATCAACG GCGTGCCGAC GCGCGACGTG CCGCTCGTCG AATTGCGCAG GGAAATCGGC
GTGGTGCTGC AAGAATCTGT GATTTTTTCG GGGAGCGTGC TCGACAACAT CCGCTACGGC
GCGCCGGAAG CCACGCTTGC GCAAGTACAA CAGGCCGCCG ACATGGCGGC TGCGGCTGGC
TTTATCGAAG AACTACCGGA GGGCTACGAC ACCTTTCTCG GCGAGCGCGG CGTGCGGCTG
TCCGGCGGAC AGCGCCAGCG CATCGCGATC GCTCGCGCGA TCCTGAAGAA TCCGCCCATC
CTGCTGCTGG ACGAAGCGAC CAGTGCGCTC GATGCCGCCA GCGAACGGCT AGTGCAAAAG
GCGCTGGACA ATGCCGCGCA GAACCGCACC ACACTGGTCA TTGCACACCG CCTCGCGACC
GTCCAACAGG CCGACCGGAT TATCGTGCTG GAGCAGGGGC GGATCGTCGC GCAGGGGCGT
CATGCCGAAC TCCTTTTGAG TTCTCCGCTT TATGCTCAGC TTGCGGCTTT GCAGTTCGGC
GAGCAGTTGG GGCAGACGGC GCCCGCGCAA TGA
|
|---|
| Protein sequence | MQLFSCSRRF AAAQSIDESA VARNVGHASP RSFACLASRR LQSTEYSIRL GILMPDAMTS
PPPSRRISPL FALFPFLRPY AGRWALAFFA LVTSASATLV LPVAFKYLID RGFASGDRGH
IDRYFLALFV VSLVLATATA LRFYLVSWLG ERVTADLRRA VYDHVLSMSP QFFETTQTGE
VLSRLTADTT LIQTVVGTSL SLGLRNFFLL TGGVAMLAVT SPVLSGYIIA TLVVVIAPIV
IFGRRVRRLS RASQDKIANT SALAGEVLNA MPTVQSYTQE PFEARRYGGA VETAFETALT
RIRARAWLTA VVIVLVFTAI VFVLWLGAQA VLAGRMTAGQ LSQFILYAVF TAGAVGAVAE
VWGDLQRAAG ATERLLQLLA ARSPVLQAET TVALPARGEG IRFDDVSFSY PSRPGIAALS
SLSLEVRPGE HVALVGPSGA GKTTLFQLLL RFYDPQAGRI LINGVPTRDV PLVELRREIG
VVLQESVIFS GSVLDNIRYG APEATLAQVQ QAADMAAAAG FIEELPEGYD TFLGERGVRL
SGGQRQRIAI ARAILKNPPI LLLDEATSAL DAASERLVQK ALDNAAQNRT TLVIAHRLAT
VQQADRIIVL EQGRIVAQGR HAELLLSSPL YAQLAALQFG EQLGQTAPAQ
|
|---|
| |