Gene Bphyt_4181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4181 
Symbol 
ID6278070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp226144 
End bp226827 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content60% 
IMG OID642615280 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001887933 
Protein GI187918902 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000221958 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTCTCG CGAGCACGCC CCCCGGCCGG GCATTGAAAA CGGCCAAAGC CGGCGCCACG 
CAACCGCCCC GTCAACGCGA CCCCGAGGTC ACCCGGGCCC GCATTCTCGA AGCCGCCAAG
AAAGAGTTCG CCAAACTCGG CCTCGCCGGC GCACGCGTCG AAGCCATCGC GACGCGCGCC
AAGGCTAACA AGCGGATGAT CTATCACTAC TTCGGCAGCA AGGAGGAGTT GTTCCAGGCC
GTGCTCGAAG ATGCCTACGC CGACATCCGC TCCGCCGAAC TGAAGCTGAA CCTCGACCAC
CTGTCTCCCG AAGACGCGAT CGTCGCGCTC ACCACGCACA CGTGGAACTA CTACCTGAAG
AACCCCGAGT TCATGACGCT CGTGAACAGC GAGAACCTTC ACAAGGCGCG CCATGTGAAA
AAGTCCGAAC GGTTCAAGGA ACTGCATCAT GGCTTCATCT CGATGTTGCA ACGCATAATC
GATCGCGGCG TCGAAGCGGG CGTGTTTCGC GCGGGCGTCG ATGCACGGCA ACTGCATATC
ACCATGGCGG CGGTCGGCTA CTATTACCTG ACCAATCGCT TCACGAGCGG TGTGATCTTC
GACATCGACT TCATGAGCAA AGAGGCTTTG AAGAACCGCC TCGACTTCAA TATCGAAACC
GTTCTGCGCC TGCTGCGCCC CTGA
 
Protein sequence
MTLASTPPGR ALKTAKAGAT QPPRQRDPEV TRARILEAAK KEFAKLGLAG ARVEAIATRA 
KANKRMIYHY FGSKEELFQA VLEDAYADIR SAELKLNLDH LSPEDAIVAL TTHTWNYYLK
NPEFMTLVNS ENLHKARHVK KSERFKELHH GFISMLQRII DRGVEAGVFR AGVDARQLHI
TMAAVGYYYL TNRFTSGVIF DIDFMSKEAL KNRLDFNIET VLRLLRP