| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4118 |
|---|
| Symbol | |
|---|
| ID | 6277566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 159365 |
|---|
| End bp | 160393 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615219 |
|---|
| Product | porin Gram-negative type |
|---|
| Protein accession | YP_001887872 |
|---|
| Protein GI | 187918841 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCTGGC GCGCGGGCGT GGCAAGCGCG GCGCTGCTAT TTTGCTTGCA GAGCGTGGCG
GCCTCCGATG GCGGCGCGGG CGCCGTCACG CTGTACGGTG TGTTGGACAC CAGCCTCGAA
ATAACCGACC CGGGCTCCGG CTGGACTCCA CGTCTGGACT CGGGCGCCTA TCGTGGTTCG
CGCGTCGGCT TGCGCGGCAG CGAGCCGCTC GGCAACGGCA CCGATATCAT CTTCACGCTG
GAAAACGGCT TCAGCTCGGT CGACGGCACG CTTCAGGCTC CCGGAGTTCT ATTCAACCGA
CAGGCGTGGA TCGGCGCGCG CAACGGCTGG GGCGAACTGC GTTTCGGCCG GCAATATTCG
CCCATCTATA TCCCGTTCAA GGGCGACCTC GATGCGTTCG GCGCCGGCAC GATCGCGTCC
GGACTGAACA ACCTGTCGAA GATCACGCCT TACGCCAGCA ACGCGATTGC GTATTTCTCG
CCGGTCGTCG GCGGCTTCAG CGCGACGCTG ATGACGGCCA CGCGCGATCC GTCGGAGAAG
GACGGCAACG GCATCGACGG ATACTACGTA ACCGCCGCCT ATCAGCTCGA CAACTTCAGG
CTGCTCTACG CGCGACAGCA GACGCACGGC GCGGGCGCGC TGCGGGCGAA TCTCGGTGGC
GCGACCTACG CGATCGACAA GGTGCGTGTG TGGCTCGCGT TCTTCAACGG CGATGGCGGC
ACGCCGCTCT ATCACGGCGC GGGTGGATCG CTTTCCGCTC AGTACAGCTT TTCTCCGAGT
GCTCGCGCCT CGCTGGGCTA TGCGCACGTG CGCGACTATA CCGGCGCGGG CGCGAGCGCC
GACCAGTTCA GCGTGGCGTT CGAATATAAC TTTTCGCGGA GTCTGCTGTT CTATTTCAGC
GGGGCCTATC TGGCCAATCA CGACAATGCC AGCTTCACCC TGCGCGGCGT CAACGTGACC
GGGCTGCCGG TCTCGTATCC CGGCGCGCCG GTCAAGGGCG TGCAGCTTGG TGTGTTGGAG
CGGTTCTAA
|
|---|
| Protein sequence | MGWRAGVASA ALLFCLQSVA ASDGGAGAVT LYGVLDTSLE ITDPGSGWTP RLDSGAYRGS
RVGLRGSEPL GNGTDIIFTL ENGFSSVDGT LQAPGVLFNR QAWIGARNGW GELRFGRQYS
PIYIPFKGDL DAFGAGTIAS GLNNLSKITP YASNAIAYFS PVVGGFSATL MTATRDPSEK
DGNGIDGYYV TAAYQLDNFR LLYARQQTHG AGALRANLGG ATYAIDKVRV WLAFFNGDGG
TPLYHGAGGS LSAQYSFSPS ARASLGYAHV RDYTGAGASA DQFSVAFEYN FSRSLLFYFS
GAYLANHDNA SFTLRGVNVT GLPVSYPGAP VKGVQLGVLE RF
|
|---|
| |