| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4002 |
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| Symbol | |
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| ID | 6277873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 14550 |
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| End bp | 17606 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642615105 |
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| Product | cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter |
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| Protein accession | YP_001887758 |
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| Protein GI | 187918727 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01193] ABC-type bacteriocin transporter
[TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCAC CCCAGACCGC GCCCTCCGCA GCCGAGTTTC TCACCTCGGT GGAAATTTTT
TCGCCGTTTT CGCGCGACGA GATCGAGCGT CTTGCCGAAT ATGCGCAAGC GCGCTTCTAT
TCGTTCGGAG AAACGGTTTG CTCGGCGGGC GAGACGGCTG ACGGTCTGTA CGTGATTCGT
TCGGGTTCCG TACGGATATT CTCGGAGGAG CACGGCAAGG AAACCAGCTT GGGCGTGCGC
AAGTCGGGTG AGATCTTCGC CGATATTGCG ATGTTGCGGA CCTATGTCCA CGAAGCCTCG
GTGCGGTCGT CGGCAAAAAC CGAGTTGCTG TTTATTCCGC GCGCCGCGAT CGAGCCTGTG
ATCGCGGGCA ATCAGGCCGC GTTGGCGTTC GTTGCCAGCT ATGTGGCGAT CAATTCGGCG
GGTGGCTTTG TCGCGCAGTT ATTCGATCTG CGCGGCAAAC TGAACAAGGC CGAACTCGAA
GAGTATGTGC GCAGCGTCGG CGTGAAACGG GTGGCCGCGG GCAAGGAAAT CCTCAAGCAG
GACGGACGCG AGGACCGGCG CCTTTACGTG GTGCGCCATG GTGAAGTGCG TATCGTGCGG
CACGAGGAGG GGCACGACTA CACGCTCGCC ACGCTCGGAG AAGGCGAAAT ATTCGGCGAA
AAGGCGTGTT TGATGCGCCA GGAACAGATG GCGTCGGTGG TTGCGACGAC CGACACGCGC
CTGCTGGTGA TTCCGGAGCG CACCGTTCAC TTCATTCTCG AACGCAATCC GAAGTTGCGC
GAAGTGCTCG ACGAGCGCAT TCGCTACGGC GACCGCGAAT TGCAGCGGCA AAAGCGGGTC
GAACAGCGCC GCAAGCTGCC GCTGATGCTC GATTTGCAAA GCAAGCCCGA GTTCGGCGAG
AAAGTCATCA AACGCTTCGC GCTGGTCGAG CAGGCCGAAG AAATGGATTG CGGTGCGGCG
TGCCTTGCCA TGGTATGCCG CCACTACAGC ATTCCAATGA CGCTCGGAAA ATTGCGCGAA
CTCGCCAACG TCACAACCCA GGGCGCGACG CTCGACAGTC TCGCGCGCGC CGGCGAATCG
CTCGGCTTTA CAGCGCGCGG CGTGCAATGC ACGTTCGATT CGTTGCGCGG TTTCGATCTG
CCGTTCATCG TGCATTGGGA GGGCTATCAC TACGTCGTGG TGTACGGGCT CTCCAAAGAG
TACGTATGGG TTGCGGATCC GGCGGTTGGC TTCAAGAAAA TGACGGTGGA AGATTTCGAG
CGCGGTTGGA GCGGCACCTG TCTGCTGTTT ACCGGTGGGC CGCATCTGCT GCAAATGTCC
GCCGCGCGTT CGCCATGGAT ACGCTTTGTC GGCTACCTCA AGCCGTACAA AAAGATTCTC
GGCCACCTGT TCCTCGCCAC CTTCGTGATT CAGGTACTGG GCGTAATTCC GCCGCTGATT
ATCCAAAACA TTCTGGACGG CGTGATCGTT CATCAGAATG TCAGCCTGCT GCATCTGCTG
ATTGGCGGCC TGATCATTTC CAATGTCTTT TCGCAATTGA TGTCGTCGAT TCGTGCGTAT
CTGGCGAATT TCATGGTGCG AAACATGGAC TTCGCGATGA TGTCGCAGTT CTTCAAGCAC
ACCATGTCGC TGCCGTTTTC GTTCTTTGCC AAGCGCAAGA CCGGCGACAT TTTCGCGCGC
TTCCAGGAGA ACCAGACGAT CCGCGCGTTC CTCACCGAAT CCACCGTTAC CACGGCGTTG
AACCTGCTGA TGGTCTTCAT CTACTTCACG ATCATGTTCG TCTACAACGT GAAGATGACG
CTGGTGCTGA TCGCGTTCGT CATTCCGATC ATGGCGCTGA CCGCGATCGC CACGCCCAAG
ATCAAAGGCT ATGCGCGCGA AGTGTTCACC GCATCGACCG AGTCGAAGTC GTTTCTGATG
GAAGCGCTCG CTGGTGTGGA GACCATCAAG GGCATGGGCA TCGAGCGGCC GGTGCGCTTG
CGCTGGGAGA AGAAGTACGC CAAGGCGCTC GAAGTGCAGT ATCGCGCGCA CGCGTTCAAT
ATTCTCGTGG GACTCGGCAG CCAGTTGCTG AACTCGGCGA CGACGATTGC GATTCTGTGG
GTCGGCGCGA ATCTCGTGCT GGCGCGCGAA ATGACGATTG GTCAGTTGAT CGCGTTCAAT
GCGTTCATGG GGAGCGTACT GGGTCCGCTC ATGGGCCTGG TCGGTTTGTG GAGCATGTTG
AACGACGCGG GCGTGGCGAT GGAACGCCTC GGCGATGTGC TCGATATCGA ACCCGAGCAG
AAACCCCAGG ATTTGCCTTC GCGCGTGATG TTGCCCGAAC TGCAAGGCGA GATCAGCTTG
AGCGGCGTGT ATTTCCGCTA TGGCGAAAAC GACTCGGCAT ATGTGCTCGA AAACATCAGC
TTCGATATCA AGCCCGGCGA ACTGGTGGCG ATTGTCGGAC GCAGCGGGTC GGGCAAGACG
ACGCTCGCCA AATTGCTGGT CGGCTTCTAC ACGCCGACCG AGGGCAAGAT GACGATCGAC
GGCTACGATC TCGGCGTGGT CGACAAAGCC TATTACCGTG CGCAGATCGG CTATGTGATG
CAGAGCAATT TGCTGTTCTC CGGCACGATT TCGGAGAACA TCGCGAGTGG CGACGATGCG
CCCGATCGGC GCCGCATCGA GGAAGTCGCG AAGATGGCCG ACGCGCACGG ATTTATCAGC
AAGATGCCGC TTGGCTACGA GCAGATTGTC GGCGAGCGCG GAATTGGCTT GTCGGGCGGG
CAGATCCAGC GGCTGTGCAT CGCGCGGGCG CTGTATCACG ATCCGCGTCT GCTCGTATTC
GACGAAGCGA CTTCGGCATT GGACTCGCAA TCGGAGAGCA ATATTCTCGG CAATATGCAT
GACATTCTGA AGGGCCGCAC GGCGGTGATC ATCGCGCACC GGCTCAGCAC GATCATGCGT
GCGGACAAGA TTCTCGTGCT GTATGAAGGG GCGATTGTCG AACAGGGCCG TCACGATGAG
CTGATCCAGC GCGGCGGCAT GTATTACCAG CTGGTCCAGA AACAGTTGAG TGCATGA
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| Protein sequence | MDAPQTAPSA AEFLTSVEIF SPFSRDEIER LAEYAQARFY SFGETVCSAG ETADGLYVIR
SGSVRIFSEE HGKETSLGVR KSGEIFADIA MLRTYVHEAS VRSSAKTELL FIPRAAIEPV
IAGNQAALAF VASYVAINSA GGFVAQLFDL RGKLNKAELE EYVRSVGVKR VAAGKEILKQ
DGREDRRLYV VRHGEVRIVR HEEGHDYTLA TLGEGEIFGE KACLMRQEQM ASVVATTDTR
LLVIPERTVH FILERNPKLR EVLDERIRYG DRELQRQKRV EQRRKLPLML DLQSKPEFGE
KVIKRFALVE QAEEMDCGAA CLAMVCRHYS IPMTLGKLRE LANVTTQGAT LDSLARAGES
LGFTARGVQC TFDSLRGFDL PFIVHWEGYH YVVVYGLSKE YVWVADPAVG FKKMTVEDFE
RGWSGTCLLF TGGPHLLQMS AARSPWIRFV GYLKPYKKIL GHLFLATFVI QVLGVIPPLI
IQNILDGVIV HQNVSLLHLL IGGLIISNVF SQLMSSIRAY LANFMVRNMD FAMMSQFFKH
TMSLPFSFFA KRKTGDIFAR FQENQTIRAF LTESTVTTAL NLLMVFIYFT IMFVYNVKMT
LVLIAFVIPI MALTAIATPK IKGYAREVFT ASTESKSFLM EALAGVETIK GMGIERPVRL
RWEKKYAKAL EVQYRAHAFN ILVGLGSQLL NSATTIAILW VGANLVLARE MTIGQLIAFN
AFMGSVLGPL MGLVGLWSML NDAGVAMERL GDVLDIEPEQ KPQDLPSRVM LPELQGEISL
SGVYFRYGEN DSAYVLENIS FDIKPGELVA IVGRSGSGKT TLAKLLVGFY TPTEGKMTID
GYDLGVVDKA YYRAQIGYVM QSNLLFSGTI SENIASGDDA PDRRRIEEVA KMADAHGFIS
KMPLGYEQIV GERGIGLSGG QIQRLCIARA LYHDPRLLVF DEATSALDSQ SESNILGNMH
DILKGRTAVI IAHRLSTIMR ADKILVLYEG AIVEQGRHDE LIQRGGMYYQ LVQKQLSA
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