| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4928 |
|---|
| Symbol | deoC |
|---|
| ID | 6271011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 4592742 |
|---|
| End bp | 4593521 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641728654 |
|---|
| Product | deoxyribose-phosphate aldolase |
|---|
| Protein accession | YP_001883045 |
|---|
| Protein GI | 187730263 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
|---|
| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATC TGAAAGCAAG CAGCCTGCGT GCACTGAAAT TGATGGACCT GACCACCCTG
AATGACGACG ACACCGACGA GAAAGTAATT GCTCTGTGTC ATCAGACCAA AACTCCGGTC
GGCAATACCG CCGCTATCTG TATCTATCCT CGCTTTATCC CGATTGCTCG CAAAACGCTG
AAAGAGCAGG GCACCCCGGA AATCCGAATC GCTACGGTAA CCAACTTCCC ACACGGTAAC
GATGACATCG AAATCGCGCT GGCAGAAACC CGTGCGGCAA TCGCCTACGG TGCTGATGAA
GTTGACGTTG TGTTCCCGTA CCGCGCGCTG ATGGCGGGTA ACGAGCAGGT TGGTTTTGAC
CTGGTGAAAG CCTGTAAAGA GGCTTGCGCG GCAGCGAATG TACTGCTGAA AGTGATCATC
GAAACCGGCG AACTGAAAGA CGAAGCGCTG ATCCGTAAAG CGTCTGAAAT CTCCATCAAA
GCGGGTGCTG ACTTCATCAA AACCTCTACC GGTAAAGTGG CAGTGAACGC GACGCCGGAA
AGCGCGCGCA TCATGATGGA AGTGATCCGT GATATGGGCG TAGAAAAAAC CGTTGGTTTC
AAACCGGCGG GCGGCGTGCG TACTGCGGAA GATGCGCAGA AATATCTCGC CATCGCAGAT
GAACTGTTCG GTGCTGACTG GGCAGATGCG CGTCACTACC GCTTTGGTGC TTCCAGCCTG
CTGGCAAGCC TGTTGAAAGC GCTGGGCCAC GGTGACGGTA AGAGCGCCAG CAGCTACTAA
|
|---|
| Protein sequence | MTDLKASSLR ALKLMDLTTL NDDDTDEKVI ALCHQTKTPV GNTAAICIYP RFIPIARKTL
KEQGTPEIRI ATVTNFPHGN DDIEIALAET RAAIAYGADE VDVVFPYRAL MAGNEQVGFD
LVKACKEACA AANVLLKVII ETGELKDEAL IRKASEISIK AGADFIKTST GKVAVNATPE
SARIMMEVIR DMGVEKTVGF KPAGGVRTAE DAQKYLAIAD ELFGADWADA RHYRFGASSL
LASLLKALGH GDGKSASSY
|
|---|
| |