Gene SbBS512_E4485 details

Gene Information

• Locus tag: SbBS512_E4485
• Symbol: thiC
• ID: 6270709
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 4195060
• End bp: 4196955
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641728278
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_001882680
• Protein GI: 187730178
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 45
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGCAA CAAAACTGAC CCGCCGCGAA CAACGCGCCC GGGCCCAACA TTTTATCGAC 
ACCCTGGAAG GCACCGCCTT TCCCAACTCA AAACGCATTT ACCTCACTGG CACACACTCT 
GGCGTTCGCG TGCCGATGCG TGAGATCCAG CTTAGCCCGA CGCTAATCGG CGGCAGCAAA 
GAACAGCCGC AGTTTGAAGA AAACGAAGCG ATTCCGGTCT ACGACACCTC CGGCCCATAT 
GGCGATCCGC AGATCGCCAT TAACGTGCAG CAAGGGCTGG CAAAACTACG CCAGCCGTGG 
ATCGATGCGC GCGGCGATAC CGAAGAACTT ACCGTGCGCA GTTCCGATTA CACTAAAGCG 
CGGCTGGCAG ATGATGGCCT CGACGAACTG CGTTTTAGCG GCGTACTAAC ACCAAAACGC 
GCCAAAGCAG GACGCCGTGT CACCCAACTG CACTACGCCC GCCAGGGCAT CATCACACCG 
GAAATGGAAT TCATCGCCAT CCGCGAGAAT ATGGGCCGCG AGCGCATACG TAGCGAAGTT 
TTACGCCACC AGCATCCGGG AATGAGCTTT GGCGCACGTC TGCCGGAAAA TATCACTGCG 
GAATTTGTCC GTGATGAAGT TGCTGCCGGA CGTGCGATTA TCCCGGCCAA CATTAATCAT 
CCGGAATCGG AGCCGATGAT TATTGGCCGT AACTTCCTGG TAAAAGTTAA CGCCAATATC 
GGCAACTCGG CGGTCACCTC TTCCATCGAA GAAGAAGTGG AAAAGCTGGT ATGGTCCATG 
CGCTGGGGAG CGGATACGGT GATGGATCTC TCCACCGGTC GCTATATTCA CGAAACCCGC 
GAGTGGATTT TGCGTAACAG TCCGGTGCCG ATCGGTACAG TGCCGATCTA CCAGGCGCTG 
GAGAAGGTTA ACGGGATCGC CGAAGATCTT ACCTGGGAAG CGTTCCGCGA CACGCTGCTG 
GAACAGGCCG AGCAAGGTGT GGATTACTTC ACTATCCATG CGGGCGTACT GTTGCGCTAT 
GTGCCGATGA CCGCGAAACG CCTGACCGGT ATCGTCTCTC GCGGCGGTTC GATTATGGCG 
AAATGGTGCC TCTCCCATCA TCAGGAAAAT TTCCTCTATC AACACTTCCG CGAAATTTGT 
GAAATCTGTG CCGCTTATGA CGTTTCGCTG TCGCTGGGCG ACGGTCTGCG CCCCGGTTCT 
ATTCAGGACG CCAACGATGA AGCGCAGTTT GCCGAGCTGC ATACGCTGGG CGAACTGACC 
AAAATTGCCT GGGAATATGA CGTGCAGGTG ATGATTGAAG GCCCAGGCCA CGTGCCGATG 
CAGATGATCC GCCGCAATAT GACCGAGGAG TTAGAGCACT GCCACGAAGC GCCGTTTTAC 
ACTCTGGGGC CGCTAACTAC CGATATTGCG CCGGGCTATG ACCACTTCAC GTCGGGGATT 
GGTGCGTCGA TGATTGGCTG GTTTGGCTGC GCGATGCTCT GTTACGTAAC GCCAAAAGAG 
CATCTGGGTC TGCCTAATAA AGAAGATGTT AAGCAGGGGC TTATCACCTA TAAGATTGCC 
GCCCACGCCG CTGACCTGGC GAAAGGGCAT CCGGGCGCGC AAATTCGCGA TAACGCCATG 
TCGAAAGCCC GCTTCGAATT TCGCTGGGAA GACCAGTTTA ATCTGGCCCT CGACCCGTTT 
ACCGCCCGCG CTTATCACGA TGAAACCCTG CCGCAAGAGT CAGGTAAAGT CGCCCATTTT 
TGCTCCATGT GTGGGCCGAA ATTCTGCTCG ATGAAAATCA GCCAGGAAGT GCGTGATTAC 
GCCGCCACGC AAACTATTGA AATGGGAATG GCGGATATGT CGGAGAACTT CCGTGCCAGA 
GGCGGAGAAA TCTACCTGCG TAAGGAGGAA GCGTGA 

 

Protein sequence

MSATKLTRRE QRARAQHFID TLEGTAFPNS KRIYLTGTHS GVRVPMREIQ LSPTLIGGSK 
EQPQFEENEA IPVYDTSGPY GDPQIAINVQ QGLAKLRQPW IDARGDTEEL TVRSSDYTKA 
RLADDGLDEL RFSGVLTPKR AKAGRRVTQL HYARQGIITP EMEFIAIREN MGRERIRSEV 
LRHQHPGMSF GARLPENITA EFVRDEVAAG RAIIPANINH PESEPMIIGR NFLVKVNANI 
GNSAVTSSIE EEVEKLVWSM RWGADTVMDL STGRYIHETR EWILRNSPVP IGTVPIYQAL 
EKVNGIAEDL TWEAFRDTLL EQAEQGVDYF TIHAGVLLRY VPMTAKRLTG IVSRGGSIMA 
KWCLSHHQEN FLYQHFREIC EICAAYDVSL SLGDGLRPGS IQDANDEAQF AELHTLGELT 
KIAWEYDVQV MIEGPGHVPM QMIRRNMTEE LEHCHEAPFY TLGPLTTDIA PGYDHFTSGI 
GASMIGWFGC AMLCYVTPKE HLGLPNKEDV KQGLITYKIA AHAADLAKGH PGAQIRDNAM 
SKARFEFRWE DQFNLALDPF TARAYHDETL PQESGKVAHF CSMCGPKFCS MKISQEVRDY 
AATQTIEMGM ADMSENFRAR GGEIYLRKEE A