Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E4313 |
Symbol | ubiD |
ID | 6270749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 4029768 |
End bp | 4031261 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641728123 |
Product | 3-octaprenyl-4-hydroxybenzoate decarboxylase |
Protein accession | YP_001882543 |
Protein GI | 187734223 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGCCA TGAAATATAA CGATTTACGC GACTTCTTGA CGCTGCTTGA ACAGCAGGGT GAGCTAAAAC GTATCACGCT CCCGGTGGAT CCGCATCTGG AAATCACTGA AATTGCTGAC CGCACTTTGC GTGCCGGTGG GCCTGCGCTG TTGTTCGAAA ACCCTAAAGG CTACTCAATG CCGGTGCTGT GCAACCTGTT CGGTACGCCA AAGCGCGTGG CGATGGGCAT GGGACAGGAA GATGTTTCGG CGCTGCGTGA AGTTGGTAAA TTATTGGCGT TTCTGAAAGA GCCGGAGCCG CCAAAAGGTT TCCGCGACCT GTTTGATAAA CTGCCGCAGT TTAAGCAAGT ATTGAACATG CCGACAAAGC GGCTGCGTGG TGTGCCCTGC CAACAAAAAA TCGTCTCTGG CGATGACGTC GATCTCAATC GCATTCCCAT TATGACCTGC TGGCCGGAAG ATGCCGCACC GCTGATTACC TGGGGGCTGA CAGTGACGCG CGGCCCGCAT AAAGAGCGGC AGAATCTGGG CATTTATCGC CAGCAGCTGA TTGGTAAAAA CAAACTGATT ATGCGCTGGC TGTCGCATCG CGGCGGCGCG CTGGATTATC AGGAGTGGTG TGCGGCGCAT CCGGGCGAAC GTTTCCCGGT TTCTGTGGCG CTGGGTGCCG ATCCCGCCAC GATTCTCGGT GCAGTCACCC CCGTTCCGGA TACACTTTCA GAGTATGCGT TTGCCGGATT GCTGCGCGGT ACCAAGACCG AAGTGGTGAA GTGTATCTCC AATGACCTTG AAGTGCCCGC CAGTGCGGAG ATTGTGCTGG AAGGGTATAT CGAACAAGGC GAAACTGCGC CGGAAGGGCC GTATGGCGAC CACACCGGTT ACTATAACGA AGTCGATAGT TTCCCGGTAT TTACCGTGAC GCATATTACC CAGCGTGAAG ATGCGATTTA CCATTCCACC TATACCGGGC GTCCGCCAGA TGAGCCCGCG GTACTGGGCG TGGCGTTGAA CGAAGTGTTT GTACCGATTC TGCAAAAACA GTTCCCGGAA ATTGTCGATT TTTACCTGCC GCCGGAAGGC TGTTCTTATC GTCTGGCGGT AGTGACGATC AAAAAACAGT ACGCCGGACA CGCGAAGCGC GTCATGATGG GCGTCTGGTC GTTCTTACGC CAGTTTATGT ACACTAAATT TGTGATCGTT TGCGATGATG ACGTCAACGC ACGCGACTGG AACGATGTGA TTTGGGCGAT TACCACCCGT ATGGACCCGG CGCGGGATAC TGTTCTGGTA GAAAATACGC CTATTGATTA TCTGGATTTT GCCTCGCCTG TCTCCGGGCT GGGTTCAAAA ATGGGGCTGG ATGCCACGAA TAAATGGCCG GGGGAAACCC AGCGTGAATG GGGACGTCCC ATCAAAAAAG ATCCAGATGT TGTCGCGCAT ATTGACGCCA TCTGGGATGA ACTGGCTATT TTTAACAACG GTAAAAGCGC CTGA
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Protein sequence | MDAMKYNDLR DFLTLLEQQG ELKRITLPVD PHLEITEIAD RTLRAGGPAL LFENPKGYSM PVLCNLFGTP KRVAMGMGQE DVSALREVGK LLAFLKEPEP PKGFRDLFDK LPQFKQVLNM PTKRLRGVPC QQKIVSGDDV DLNRIPIMTC WPEDAAPLIT WGLTVTRGPH KERQNLGIYR QQLIGKNKLI MRWLSHRGGA LDYQEWCAAH PGERFPVSVA LGADPATILG AVTPVPDTLS EYAFAGLLRG TKTEVVKCIS NDLEVPASAE IVLEGYIEQG ETAPEGPYGD HTGYYNEVDS FPVFTVTHIT QREDAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG CSYRLAVVTI KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW NDVIWAITTR MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGRP IKKDPDVVAH IDAIWDELAI FNNGKSA
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