| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4219 |
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| Symbol | trmE |
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| ID | 6273054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 3942464 |
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| End bp | 3943828 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641728039 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001882460 |
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| Protein GI | 187732019 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.99545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATA ATGACACTAT CGTAGCCCAG GCCACGCCTC CGGGACGTGG CGGCGTTGGC
ATCCTGCGCA TCTCCGGCTT CAAAGCCCGT GAAGTTGCCG AAACCGTGCT GGGTAAACTG
CCTAAGCCGC GCTACGCCGA TTATCTTCCG TTTAAAGACG CCGACGGCAG CGTGCTCGAT
CAGGGGATTG CGCTATGGTT CCCTGGCCCG AACTCGTTCA CTGGCGAAGA TGTGCTGGAA
CTGCAAGGTC ATGGCGGTCC GGTGATCCTC GACCTGCTGT TAAAACGCAT TCTGACCATT
CCCGGCCTGC GGATTGCTCG CCCTGGTGAG TTTTCCGAAC GCGCGTTTCT TAACGATAAA
CTTGACTTAG CCCAGGCCGA GGCGATTGCC GATCTTATCG ACGCCAGTTC GGAACAGGCG
GCCCGTTCGG CACTTAACTC GCTGCAAGGC GCATTCTCCG CACGGGTTAA TCATCTGGTA
GAAGCCCTCA CCCACTTGCG CATTTACGTC GAAGCGGCAA TTGATTTCCC CGATGAAGAG
ATCGATTTCC TCTCCGACGG AAAAATTGAA GCCCAGCTCA ATGACGTTAT TGCCGATCTT
GATGCAGTGC GTGCTGAAGC ACGTCAGGGT AGTTTGTTGC GCGAAGGGAT GAAAGTGGTG
ATTGCCGGAC GTCCTAACGC CGGTAAATCG AGCCTGTTAA ACGCGCTGGC GGGGCGTGAA
GCGGCAATCG TAACCGATAT CGCCGGAACT ACGCGTGACG TGCTGCGTGA GCATATCCAC
ATTGACGGAA TGCCGCTGCA TATCATCGAT ACCGCCGGGC TACGTGAAGC CAGTGACGAA
GTAGAACGTA TTGGTATCGA GCGCGCGTGG CAGGAAATTG AACAGGCCGA CCGCGTGCTG
TTTATGGTCG ATGGCACCAC AACAGACGCC GTGGATCCGG CAGAGATCTG GCCGGAATTT
ATTGCCCGTC TGCCAGCGAA ACTGCCGATC ACCGTGGTGC GCAATAAAGC CGATATCACC
GGCGAAACGC TGGGAATGAG TGAAGTGAAC GGTCACGCGT TAATTCGTCT CTCAGCAAGG
ACTGGTGAAG GCGTGGACGT GCTGCGTAAC CATCTCAAAC AGAGCATGGG CTTTGACACC
AACATGGAAG GCGGCTTCCT GGCGCGTCGT CGCCACCTAC AGGCGCTGGA ACAGGCAGCG
GAACATCTAC AACAGGGCAA AGCGCAACTG TTGGGAGCCT GGGCAGGTGA ACTGCTGGCG
GAAGAGTTGC GTCTGGCACA GCAGAACTTA AGCGAAATCA CCGGGGAATT TACTTCAGAC
GACCTGCTGG GGCGGATTTT CTCCAGCTTC TGTATTGGTA AGTAA
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| Protein sequence | MSDNDTIVAQ ATPPGRGGVG ILRISGFKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAR
TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA
EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
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