| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4057 |
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| Symbol | rfaQ |
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| ID | 6269922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 3789891 |
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| End bp | 3790949 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641727897 |
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| Product | lipopolysaccharide core biosynthesis protein |
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| Protein accession | YP_001882329 |
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| Protein GI | 187733694 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02201] lipopolysaccharide heptosyltransferase III, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.245519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGATAAGC TATTTCGAAG AATTTTGCTC ATTAAGATGC GTTTTCATGG GGATATGTTA
TTAACTACTC CCGTCATTAG TTCGCTGAAA AAAAATTACC CTGACGCAAA AATCGATGTG
CTGCTTTATC AGGACACCAT CCCGATCCTG TCTGAAAATC CAGAGATTAA CGCGCTCTAC
GGCATAAAAA ATAAAAAAGC AAAAGCCTCA GAAAAAATTG CCAACTTTTT TCATCTCATC
AAGGTATTAC GTGCCAATAA GTATGACCTT ATCGTCAATC TCACCGATCA ATGGATGGTT
GCTATACTGG TTCGCTTATT AAATGCCCGT GTGAAAATTT CCCAGGATTA TCATCATCGG
CAGTCTGCTT TTTGGCGTAA AAGTTTCACC CATTTGGTGC CGTTGCAGGG TGGAAATGTG
GTGGAAAGTA ACTTATCCGT GCTGACCCCA TTGGGAGTTG ATTCGTTGGT GAAGCAGACA
ACCATGAGTT ACCCGCCTGC AAGCTGGAAA CGTATGCGTC GCGAACTTGA TCACGCTGGT
GTTGGACAAA ATTATGTGGT TATCCAACCT ACGGCGCGGC AAATCTTCAA ATGCTGGGAC
AACGCCAAGT TTTCCGCTGT GATTGATGCC TTACATGTTC GTGGTTATGA AGTTGTTCTG
ACGTCCGGCC CAGATAAAGA CGATCTGGCC TGCGTCAATG AAATTGCGCA GGGATGCCAG
ACGCCACCAG TAACGGCGCT GGCTGGAAAG GTGACCTTCC CGGAACTTGG TGCGTTAATC
GATCATGCGC AGCTGTTTAT TGGCGTTGAT TCCGCACCGG CGCATATTGC CGCTGCAGTT
AATACGCCGC TGATATCGCT GTTTGGTGCG ACAGACCATA TTTTCTGGCG TCCCTGGTCA
AATAACATGA TTCAATTCTG GGCGGGAGAT TACCGGGAAA TGCCAACGCG CGATCAGCGT
GACCGAAATG AGATGTATCT TTCGGTTATT CCGGCGGCAG ATGTCATTGC TGCTGTCGAT
AAATTACTGC CCTCCTCCAC GACAGGTACG TCGTTATGA
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| Protein sequence | MDKLFRRILL IKMRFHGDML LTTPVISSLK KNYPDAKIDV LLYQDTIPIL SENPEINALY
GIKNKKAKAS EKIANFFHLI KVLRANKYDL IVNLTDQWMV AILVRLLNAR VKISQDYHHR
QSAFWRKSFT HLVPLQGGNV VESNLSVLTP LGVDSLVKQT TMSYPPASWK RMRRELDHAG
VGQNYVVIQP TARQIFKCWD NAKFSAVIDA LHVRGYEVVL TSGPDKDDLA CVNEIAQGCQ
TPPVTALAGK VTFPELGALI DHAQLFIGVD SAPAHIAAAV NTPLISLFGA TDHIFWRPWS
NNMIQFWAGD YREMPTRDQR DRNEMYLSVI PAADVIAAVD KLLPSSTTGT SL
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