| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3912 |
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| Symbol | mdtF |
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| ID | 6272455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3638217 |
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| End bp | 3641330 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641727766 |
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| Product | multidrug resistance protein MdtF |
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| Protein accession | YP_001882200 |
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| Protein GI | 187733839 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.149985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAACT ATTTTATTGA TCGCCCGGTT TTTGCCTGGG TACTTGCCAT TATTATGATG
CTTGCAGGTG GTCTGGCGAT CATGAACTTA CCGGTTGCGC AGTATCCGCA GATTGCGCCA
CCGACCATTA CCGTCAGCGC TACCTATCCA GGTGCCGATG CGCAAACGGT AGAAGACTCG
GTCACTCAGG TGATTGAGCA AAATATGAAT GGGCTTGATG GCCTGATGTA CATGTCTTCA
ACCAGTGATG CGGCGGGTAA TGCCTCTATC ACTCTGACCT TCGAGACTGG GACATCTCCT
GATATCGCAC AGGTTCAGGT GCAAAATAAA CTGCAACTCG CTATGCCTTC ATTACCTGAA
GCGGTGCAGC AGCAGGGGAT TAGCGTTGAT AAGTCGAGCA GTAATATTCT GATGGTAGCG
GCGTTTATTT CTGATAACGG CAGCCTCAAC CAGTACGATA TCGCGGACTA TGTAGCGTCT
AATATCAAAG ACCCGCTAAG CCGTACCGCG GGCGTTGGTA GCGTACAGCT CTTTGGTTCC
GAGTACGCCA TGCGTATCTG GCTGGACCCG CAAAAACTCA ATAAATACAA TCTGGTACCT
TCCGATGTTA TTTCCCAGAT TAAGGTGCAA AACAACCAGA TTTCCGGTGG TCAACTGGGT
GGCATGCCAC AGGCGGCAGA CCAGCAACTA AACGCCTCGA TCATTGTGCA GACGCGTCTG
CAAACGCCGG AAGAATTTGG CAAAATCCTG TTGAAAGTTC AGCAAGATGG TTCGCAAGTG
CTGCTGCGTG ATGTCGCCCG CGTCGAACTT GGAGCGGAAG ATTATTCCAC CGTGGCGCGC
TATAACGGCA AACCTGCTGC CGGGATCGCC ATCAAACTGG CTACCGGAGC AAACGCCCTG
GATACCTCGC GGGCAGTCAA AGAGGAGCTG AACCGCTTAT CAGCCTATTT CCCCGCAAGT
CTGAAGACGG TTTATCCTTA CGACACCACG CCGTTTATCG AAATTTCTAT TCAGGAAGTT
TTTAAAACAC TGGTTGAGGC TATCATCCTC GTCTTCCTGG TCATGTATCT GTTTTTGCAG
AATTTCCGTG CCACAATCAT CCCGACGATT GCCGTACCGG TGGTTATTCT CGGGACGTTT
GCGATCTTGT CGGCGGTCGG TTTCACCATC AACACGTTAA CTATGTTCGG GATGGTGCTG
GCGATAGGGT TACTGGTGGA TGACGCCATC GTGGTGGTGG AGAACGTCGA GCGTGTCATT
GCGGAAGATA AGCTACCACC GAAGGAAGCG ACGCATAAAT CGATGGGGCA GATCCAACGT
GCGCTGGTCG GTATTGCTGT TGTTCTTTCC GCAGTGTTTA TGCCGATGGC CTTTATGAGC
GGCGCAACCG GGGAGATCTA CCGCCAGTTC TCCATCACGC TGATCTCCTC CATGCTGCTT
TCAGTATTTG TGGCAATGAG CCTGACCCCT GCCCTGTGCG CCACCATTCT GAAAGCCGCG
CCGGAAGGCG GTCACAAACC TAACGCCCTG TTCGCACGCT TCAACACGCT GTTTGAAAAA
TCAACTCAGC ACTATACCGA TAGCACCCGC TCGCTGTTGC GTTGTACCGG TCGCTACATG
GTGGTCTACC TGCTGATTTG CGCCGGGATG GCGGTGCTGT TCCTGCGTAC ACCGACCTCT
TTCTTACCAG AAGAGGATCA GGGGGTATTT ATGACCACCG CGCAGTTACC TTCCGGTGCC
ACCATGGTTA ACACCACGAA AGTGCTGCAA CAGGTGACGG ATTATTATCT TACAAAAGAG
AAAGATAATG TTCAGTCGGT GTTTACCGTT GGCGGCTTTG GCTTCAGCGG CCAGGGGCAA
AACAACGGCC TGGCGTTTAT CAGTCTCAAG CCGTGGTCTG AACGTGTCGG TGAGGAAAAC
TCGGTTACCG CGATCATTCA GCGGGCAATG ATTGCGTTAA GCAGTATCAA TAAAGCCGTC
GTCTTCCCGT TCAACTTACC CGCGGTGGCT GAACTGGGTA CCGCGTCAGG TTTTGATATG
GAACTGCTGG ACAACGGTAA CCTGGGGCAC GAAAAACTAA CCCAGGCACG AAACGAGCTG
TTATCACTGG CAGCGCAATC GCCTGACCAG GTCACCGGGG TACGCCCGAA CGGCCTGGAA
GATACGCCGA TGTTCAAAGT GAACGTCAAC GCCGCGAAAG CTGAGGCAAT GGGTGTGGCG
CTGTCTGATA TCAACCAGAC AATTTCCACC GCCTTCGGCA GCAGCTACGT GAACGACTTC
CTCAACCAGG GGCGGGTGAA AAAAGTGTAT GTCCAGGCAG GCACGCCGTT CCGTATGTTG
CCGGATAACA TCAACCAATG GTATGTACGC AACGCCTCTG GCACGATGGC ACCGCTTTCT
GCCTACTCGT CTACCGAATG GACCTATGGT TCACCGCGAT TGGAACGCTA CAACGGCATC
CCGTCAATGG AGATTTTAGG TGAAGCGGCG GCCGGGAAAA GTACCGGTGA CGCTATGAAA
TTTATGGCAG ACCTGGTCGC TAAACTTCCG GCAGGCGTCG GCTACTCATG GACCGGACTG
TCGTATCAGG AAGCGTTATC CTCAAACCAG GCTCCTGCAC TGTATGCCAT TTCACTGGTC
GTGGTGTTCC TCGCCCTCGC CGCACTCTAT GAGAGCTGGT CAATTCCGTT CTCGGTGATG
TTGGTTGTTC CGTTAGGCGT CGTTGGCGCA TTACTGGCCA CCGATCTGCG CGGCTTAAGT
AATGACGTCT ACTTCCAGGT TGGTTTGCTG ACCACCATCG GGCTTTCCGC CAAGAACGCC
ATCCTGATTG TCGAATTTGC CGTTGAGATG ATGCAGAAAG AAGGGAAAAC GCCGATAGGG
GCAATCATCG AAGCGGCGCG GATGCGTTTA CGCCCAATCC TGATGACCTC TCTGGCCTTT
ATTCTCGGCG TGCTGCCGCT GGTTATCAGT CATGGTGCCG GTTCTGGCGC GCAAAACGCG
GTAGGTACCG GCGTGATGGG CGGGATGTTT GCCGCAACAG TGCTGGCAAT TTACTTCGTT
CCGGTCTTTT TCGTTGTAGT GGAACATCTC TTTGCCCGCT TTAAAAAAGC GTAA
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| Protein sequence | MANYFIDRPV FAWVLAIIMM LAGGLAIMNL PVAQYPQIAP PTITVSATYP GADAQTVEDS
VTQVIEQNMN GLDGLMYMSS TSDAAGNASI TLTFETGTSP DIAQVQVQNK LQLAMPSLPE
AVQQQGISVD KSSSNILMVA AFISDNGSLN QYDIADYVAS NIKDPLSRTA GVGSVQLFGS
EYAMRIWLDP QKLNKYNLVP SDVISQIKVQ NNQISGGQLG GMPQAADQQL NASIIVQTRL
QTPEEFGKIL LKVQQDGSQV LLRDVARVEL GAEDYSTVAR YNGKPAAGIA IKLATGANAL
DTSRAVKEEL NRLSAYFPAS LKTVYPYDTT PFIEISIQEV FKTLVEAIIL VFLVMYLFLQ
NFRATIIPTI AVPVVILGTF AILSAVGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVI
AEDKLPPKEA THKSMGQIQR ALVGIAVVLS AVFMPMAFMS GATGEIYRQF SITLISSMLL
SVFVAMSLTP ALCATILKAA PEGGHKPNAL FARFNTLFEK STQHYTDSTR SLLRCTGRYM
VVYLLICAGM AVLFLRTPTS FLPEEDQGVF MTTAQLPSGA TMVNTTKVLQ QVTDYYLTKE
KDNVQSVFTV GGFGFSGQGQ NNGLAFISLK PWSERVGEEN SVTAIIQRAM IALSSINKAV
VFPFNLPAVA ELGTASGFDM ELLDNGNLGH EKLTQARNEL LSLAAQSPDQ VTGVRPNGLE
DTPMFKVNVN AAKAEAMGVA LSDINQTIST AFGSSYVNDF LNQGRVKKVY VQAGTPFRML
PDNINQWYVR NASGTMAPLS AYSSTEWTYG SPRLERYNGI PSMEILGEAA AGKSTGDAMK
FMADLVAKLP AGVGYSWTGL SYQEALSSNQ APALYAISLV VVFLALAALY ESWSIPFSVM
LVVPLGVVGA LLATDLRGLS NDVYFQVGLL TTIGLSAKNA ILIVEFAVEM MQKEGKTPIG
AIIEAARMRL RPILMTSLAF ILGVLPLVIS HGAGSGAQNA VGTGVMGGMF AATVLAIYFV
PVFFVVVEHL FARFKKA
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