Gene SbBS512_E3410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3410 
SymbolgspF 
ID6272618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3170018 
End bp3171241 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content58% 
IMG OID641727299 
Productgeneral secretion pathway protein GspF 
Protein accessionYP_001881748 
Protein GI187732930 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID[TIGR02120] general secretion pathway protein F 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACTGT TTTACTATCA GGCGCTGGAG CGTAATGGTC GCAAAACCAA AGGCATGATT 
GAGGCGGATT CCGCGCGTCA TGCCCGCCAG TTGTTGCGCG GTAAAGAGCT TATCCCCGTG
CACATTGAAG CCAGGATGAA TGCATCGGCA GGGGGAATGT TGCAGCGTCG GCGGCACGCA
CATCGTCGCG TGGCGGCGGC AGATCTGGCG CTGTTCACGC GCCAACTGGC AATGCTGGTG
CAGGCAGCAA TGCCGTTGGA AACCTGCTTG CAGGCGGTCA GTGAGCAAAG TGAAAAACTG
CATGTGAAGA GCCTCGGAAT GGCGCTGCGC AGCCGGATTC AGGAAGGTTA TACCCTGTCG
GACAGCCTGC GCGAACATCC CCGCGTCTTT GATTCCCTGT TTTGTTCGAT GGTCGCTGCC
GGAGAAAAAT CCGGGCATCT CGACGTGGTG CTCAATCGCC TGGCAGATTA CACCGAACAG
CGACAGCGCC TGAAATCACG TCTATTGCAG GCCATGCTCT ATCCGCTGGT TATGCTGGTG
GTGGCAACGG GCGTGGTCAC TATTTTGCTG ACGGCAGTGG TGCCGAAAAT CATCGAACAG
TTTGATCATC TCGGACACGC GCTACCCTCC TCCACCCGTG CGCTTATCGC CATGAGTGAT
GCGTTACAGG CCAGCGGCGT TTACTGGCTG GCGGGATTGC TGGCGCTTCT GGTGCTGGGG
CAATGGCTAC TTAAAAATCC GACTATGCGC CTGCGCTGGG ATAAAACCTT GCTGCGTCTG
CCCGTGACGG GCCGTGTTGC GCGCGGGCTG AATACGGCGC GTTTTTCCCG CACATTAAGC
ATCCTCACCG CCAGCAGTGT TCCGCTACTG GAAGGCATTC AGACCGCTGC CGCCGTGTCG
GCAAATCGCT ATGTCGAACA ACAACTGCTG CTGGCGGCAG ATCGCGTCCG CGAAGGAAGC
AGTCTGCGCG CCGCGCTGGT GGAGTTGCGC CTGTTCCCGC CGATGATGCT GTACATGATC
GCTTCCGGCG AACAGAGCGG CGAACTGGAA ACCATGCTTG AGCAGGCCGC TGTTAACCAG
GAACGGGAAT TTGATACCCA GGTGGGGCTG GCGTTGGGGC TGTTTGAGCC TGCGCTGGTG
GTGATGATGG CGGGCGTGGT GCTGTTTATT GTCATCGCCA TCCTCGAGCC GATGCTGCAA
CTGAATAATA TGGTTGGAAT GTAA
 
Protein sequence
MALFYYQALE RNGRKTKGMI EADSARHARQ LLRGKELIPV HIEARMNASA GGMLQRRRHA 
HRRVAAADLA LFTRQLAMLV QAAMPLETCL QAVSEQSEKL HVKSLGMALR SRIQEGYTLS
DSLREHPRVF DSLFCSMVAA GEKSGHLDVV LNRLADYTEQ RQRLKSRLLQ AMLYPLVMLV
VATGVVTILL TAVVPKIIEQ FDHLGHALPS STRALIAMSD ALQASGVYWL AGLLALLVLG
QWLLKNPTMR LRWDKTLLRL PVTGRVARGL NTARFSRTLS ILTASSVPLL EGIQTAAAVS
ANRYVEQQLL LAADRVREGS SLRAALVELR LFPPMMLYMI ASGEQSGELE TMLEQAAVNQ
EREFDTQVGL ALGLFEPALV VMMAGVVLFI VIAILEPMLQ LNNMVGM