Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3386 |
Symbol | rdgB |
ID | 6272190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3149904 |
End bp | 3150497 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641727277 |
Product | putative deoxyribonucleotide triphosphate pyrophosphatase |
Protein accession | YP_001881727 |
Protein GI | 187730440 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAAG TTGTCCTCGC AACCGGCAAT GCCGGTAAAG TGCGTGAGCT GGCGTCGCTG CTTAGCGACT TTGGTCTTGA TATCGTGGCA CAAACAGACC TCGGCGTTGA TTCCGCTGAA GAAACCGGCC TAACCTTTAT CGAAAACGCG ATTCTGAAAG CGCGCCATGC GGCAAAAGTG ACCGGTTTAC CGGCAATTGC CGACGACTCT GGTCTGGCGG TAGATGCGCT GGGTGGCGCG CCGGGTATTT ACTCCGCGCG TTATTCCGGT GAAGACGCGA CCGATCAAAA GAATCTGCAA AAACTGTTGG AAACACTGAA AGACGTACCG GACGACCAAC GTCAGGCACG TTTCCACTGC GTGCTGGTAT ATCTGCGTCA CGCGGAAGAT CCGACTCCGC TGGTATGCCA CGGCAGCTGG CCGGGCGTGA TTACTCGCGA ACCAGCGGGC ACTGGTGGCT TTGGTTATGA TCCAATCTTC TTCGTACCTT CCGAAGGGAA AACCGCCGCC GAACTGACCC GCGAAGAAAA GAGCGCCATT TCCCACCGTG GTCAGGCGTT GAAACTGCTG CTGGACGCTT TACGTAATGG TTAA
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Protein sequence | MQKVVLATGN AGKVRELASL LSDFGLDIVA QTDLGVDSAE ETGLTFIENA ILKARHAAKV TGLPAIADDS GLAVDALGGA PGIYSARYSG EDATDQKNLQ KLLETLKDVP DDQRQARFHC VLVYLRHAED PTPLVCHGSW PGVITREPAG TGGFGYDPIF FVPSEGKTAA ELTREEKSAI SHRGQALKLL LDALRNG
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